Array 1 9783-11314 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBR01000040.1 Campylobacter concisus strain AAUH-9UCpp 1099505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 9783 37 100.0 35 ..................................... ATAATAATATTCGATGCCCCAATTTGCGACATCAT 9855 37 100.0 39 ..................................... TTTTGAGCCTCTAAATAGCTTGGATAAAATGCCCAATAT 9931 37 100.0 45 ..................................... GAAACATGTTCCACCAAAAAATCCGGTTGTCCTTGGACATTAAGT 10013 37 100.0 37 ..................................... GTTAGTGGTGCTAACGAATGTGTAGCTACCGCCAAAG 10087 37 100.0 41 ..................................... GTTCTCATGTCCTGAAGCTGCAAGCTTCTTAGCTCCTTCAA 10165 37 100.0 42 ..................................... ACCCTTTAGCTGATGTATCTTGAACCTCAATCTCAAGAACAT 10244 37 100.0 39 ..................................... GTTATAACGCTCAAGGGAAATTATATCCCCTAGTTTTAC 10320 37 100.0 40 ..................................... TAGAATTCTAGATCGAATTCTTTAACCTCTTTTTCTCCAA 10397 37 100.0 38 ..................................... ACCATAGATAGGTCTCTCAATACTGAAACCTAAGCCAT 10472 37 100.0 35 ..................................... AAGACGAATATCTTTAGACTCATAGGTTTTACCCC 10544 37 100.0 38 ..................................... CTTAAAGATGCTAATGTTACCTCAGCTAGAGTGCTAGG 10619 37 100.0 34 ..................................... TCAAATGGATAAGATAGTATTGGTGCTACGTTTA 10690 37 97.3 38 .......................T............. AAAGCTGGAGCATAGCACCAGTAGACATCGTTAATCAA 10765 37 100.0 34 ..................................... AACTCTGGATGGAATCTCTCTCTCATAAAATTCG 10836 37 100.0 37 ..................................... CATGTCATAATATGACACATCACTAATATTACGGACT 10910 37 100.0 37 ..................................... AATTTTACTGATGTTCTCATTCTTAATCCTTTTTAAA 10984 37 97.3 35 .....................A............... TAGATTGCAGACGTTCCCAGTCTGTCAATTTTCTT 11056 37 94.6 34 ......................TT............. TCAAATGGATAAGATAGTATTGGTGCTACGTTTA 11127 37 97.3 38 .......................T............. TCGTGAGTAAATATACCAGGGTATACTTCGACGTTCAC 11202 37 97.3 36 .............C....................... TGGAAATATTTGCAGTATGCCTCAACTATCTCACCT 11275 37 97.3 0 ....................................T | C,AA [11305,11307] ========== ====== ====== ====== ===================================== ============================================= ================== 21 37 99.1 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CTTTGAGCTATGCGATAAATCAGGCATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTATTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGACTTGCGAACTTTTTTAAGATGACAAATGCCTAATTTTATGGGTTCTTTCACTTATTATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTTGGTAAAGTGTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAAGTAAGAACAGATTGACTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTACCCTTAGTGGTTTGGACTTTGGTGTAGCCACCAAAGCTTTGACCCACCTTTTGGTGAGCGCGAGCAGATGAGTAAGACCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCTTTGTATTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATATAAAGGATAAAGTAATGGACGCCCAAACCAGGATACTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 23868-22080 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBR01000103.1 Campylobacter concisus strain AAUH-9UCpp 1099569, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================== ================== 23867 33 100.0 44 ................................. GTTATTGTTGATACTGCTGTTCTCATTTTTGATCCTTTATATCT 23790 33 100.0 45 ................................. CTAGTGACAGCAATTGCTGTGTTACCAATTGCATTACCGTTATCT 23712 33 100.0 45 ................................. CTAGTGACAGCAATTGCTGTGTTACCAATTGCATTACCGTTATCT 23634 33 100.0 43 ................................. GCAAAGCACCAATACTTACCGTTAATGAGAGCCATGCTGATTA 23558 33 100.0 44 ................................. CACTCCTCAATTTGCTTTTTATCCAAAATCGCACCTTCAGATCT 23481 33 97.0 50 ............................A.... AAGCCAGCTCCTTCAATGCCCATCCATAGCTCTGTTCCCATGGTTTATTA 23398 33 93.9 47 ..........C...A.................. AATAAAGCGTCCCATTGCTGTTGAGCATAAGCGTGTTGCTGTAATTA 23318 33 93.9 41 ..........C.................A.... TCAACTAAAAGCTTAGAACCTTTGCTTAGATATTGGTATTA 23244 33 100.0 49 ................................. AACGATATCCAACCCTCCCACTCCTGACTACCATAGCCATCGTAGATCT 23162 33 93.9 32 ...GT............................ CACGTGCAGTAATTGCAGTCACATGTGCAATA Deletion [23098] 23097 33 87.9 42 .T....G.CA....................... TGATATACGCCTTTACATTCCATATCCCAGTCAAAATCATTA A,CT [23083,23089] 23019 33 100.0 44 ................................. TCCTCGCCGGTAGGCTACAAAAATTCGGCTTGGTGACCGCATTA 22942 33 100.0 47 ................................. TTATCTGTTACTGTTAAAAGTAACAGAAGACAAAGACAGAGACATCT 22862 33 100.0 44 ................................. AAAACTTTAGCAACAGCTTGAGTTGAAGCATCAACTTCAGATCT 22785 33 100.0 42 ................................. GTCTGCAATGTCTCAGGTTGATTAGAAGCTATACTGAGATCT 22710 33 97.0 44 ..............A.................. AAAACTTTAGCAACAGCTTGAGTTGAAGCATCAACTTCAGATCT 22633 33 100.0 45 ................................. GTACCATTCCCAGCACCAGAGGTTATCATCCCACTCGCGAGATCT 22555 33 100.0 45 ................................. GTACCATTCCCAGCACCAGAGGTTATCATCCCACTCGCGAGATCT 22477 33 100.0 39 ................................. TTTTTCTGCTTGACGATCTCTTTTTAATTCGTCAGATCT 22405 32 93.9 42 ..........-...A.................. TTTCCAAAAGCTCTGGAAAGAACCTTTGGCAGAACAACATCT 22331 33 100.0 41 ................................. ATTTGTCCCTCTTCGTCAGGGTCACCGCAGTGAACAAATCT 22257 33 100.0 40 ................................. TAAGAAACACTGATGTCAAGAGCATTAGACATATCCATCT 22184 33 100.0 39 ................................. ATAAATCCAGTTGGCATTGTCATTGGTTGAACACCATCT 22112 33 97.0 0 ...............................G. | ========== ====== ====== ====== ================================= ================================================== ================== 24 33 98.1 43 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTGTATGGCTAAAAGCGAGACCTTAGGCGATGGCAAGATATTTTGCCCAAGTGACACCTACGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTCTAAATTTCAAAACGCCCTTTTTACCCCATTTTTATATTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCTCTATCTCAAAAAAGACTTTCTCGAACTTTTGCATTTTTGCACTTTTAAAGTTTCCTTTTTTAGGCACTTAGCATATAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTTATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGCCTATCAATAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCTATCT # Right flank : AGGTAGGTGCATCTAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAACGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA //