Array 1 64650-65531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069427.1 Streptococcus oralis strain SF100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 64650 35 100.0 30 ................................... AATGATCTTGGCTGTTGCAGCTCCAACATT 64715 35 100.0 30 ................................... TAGGTTGGTAACTATATATTATCAAATATA 64780 35 100.0 30 ................................... TTTTAAACGAACTTCTGTAATAGCAGATAA 64845 35 100.0 30 ................................... AGTCTGTCTGCTCATGCTCTTGAATTTAAG 64910 35 100.0 31 ................................... CTCAATTCAGCAAGAGTTTCCACTTCTTCGT 64976 35 100.0 30 ................................... TACCTGCGCAACCTCCGGCGAAGTATAAAT 65041 35 100.0 31 ................................... CTCAATTCAGCAAGAGTTTCCACTTCTTCGT 65107 35 100.0 30 ................................... CTGATTTTTGTTTTCCACGCAACTCACCCA 65172 35 100.0 30 ................................... ATTCGTAATAGTAAGTATTTACGAATATTT 65237 35 100.0 30 ................................... AATCACGGTCAATAAACCATTGTTTTACAG 65302 35 97.1 30 ............................T...... AATCATTCTCAGTACCTCGAAGCGCATTGA 65367 35 100.0 30 ................................... CAGCACCTTTAACGAGTACCATTGATTGAG 65432 35 100.0 30 ................................... CGATAGCCGCCCGCAAGCGTTTTGAAAAAT 65497 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 14 35 99.8 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : ACCTTAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTAGGACTTCGTCGCTAATCTGCTTTATTTTCCACTTACATTGCGTTGTCACCTTACCTCGATATACTCAAGTATAATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAACATTTTTGTACAATCTTCGGCTTGCCGCTTAGTCTATAAACGTTTTATCCAGCAAGAATCATGATGCTAAGGGCGTTAAAAATCAGTATGAAAATAGGGAAAGGACACAGTGTTCGATGAACACAAGGAGTTTTATCTTTTTCACTAGGATTTTAGCCCAAGCTCAAATCAGCTCTCTGATATTCAGAGGGCTTTTTTATTGAG # Right flank : CCTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 726605-723207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069427.1 Streptococcus oralis strain SF100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 726604 36 100.0 30 .................................... AATTCAAAGGGAAGATTGACTGTCTCAATG 726538 36 100.0 30 .................................... TATATCCGGTGTCATACCAGCGCCCTTAAC 726472 36 100.0 30 .................................... ATATATGAGACCAAAACGATACCCGTATAG 726406 36 100.0 30 .................................... GTTAACGAAACTTTTATGGTATTATCATTA 726340 36 100.0 30 .................................... AGATAATGAACTTCCACTCTTCTTCAGTAT 726274 36 100.0 30 .................................... GTCTATGAGTAGCTTTGTTCGTGAGCAAGT 726208 36 100.0 30 .................................... CGTGAAGATCTCGACAAGCTTGTATATTTG 726142 36 100.0 30 .................................... ATGATGAAATGATGCCTGGAGTCCAGGTCG 726076 36 100.0 30 .................................... GATTTAGTAGGGTTCGATCAATGAACTATG 726010 36 100.0 30 .................................... GTAGTGAATCGATAATGACATCTAGGACAT 725944 36 100.0 30 .................................... ATGACGAAACGATACATGGAGTCCAGGTTG 725878 36 100.0 30 .................................... AATTGCAAAACGCAAACAGACGCTTGAAGC 725812 36 100.0 30 .................................... GTTCCATTTGAGCTACAACATAGCCGAGCA 725746 36 100.0 30 .................................... TTTTTCTAAGGTTACAGGTTACATCACTTT 725680 36 100.0 30 .................................... TTGCTAAATTCATGGAAGCCTTGCGTTCTA 725614 36 100.0 30 .................................... GAAGTGTGGTTCTCCGTCCTCTTTCCGAAA 725548 36 100.0 30 .................................... AAATCCAAACACAATTACTTAATTTGTCAG 725482 36 100.0 30 .................................... CAGTGTCATCCACAGAGTATGACCGAATAA 725416 36 100.0 30 .................................... TGAAATATCGAGAAACCTGGTACTTCATGG 725350 36 100.0 30 .................................... TGGCTATTGAGAAAGTTTTGAATGTTACGC 725284 36 100.0 30 .................................... AGCCCTTCAGCAACTCCCCATTCTCCGTCA 725218 36 100.0 30 .................................... TAAAGGGTGTCGATAATTCCCTGAAGGCGA 725152 36 100.0 30 .................................... TGTTTTCAGCTGAAGAAGACACCGCACTAT 725086 36 100.0 30 .................................... AAGAAAAAAGAAGGGCGCTGTTTTTTAGAA 725020 36 100.0 30 .................................... AGTTCCCCCCTCATTCAGCTTTCCAGACCG 724954 36 100.0 30 .................................... CTTGTTTGCTGCTGACCAAACGGGCGGTGT 724888 36 100.0 29 .................................... CTTACCGAAGTTTATGGAGCAGACTAGCA 724823 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 724757 36 100.0 30 .................................... TGATTATTGATAAAACAGAACAGCTCTATC 724691 36 100.0 30 .................................... AATGCAAATAGTCAAAATCCTTTGCCTGAG 724625 36 100.0 30 .................................... AGGTGATCTAACAATCAACAAATGCGTTCA 724559 36 100.0 30 .................................... TTGGCTCTACTGTTATTAAGGCGCTTTCTT 724493 36 100.0 30 .................................... TGGGTGGATGTGACTTACACTGTGCCGATT 724427 36 100.0 29 .................................... CCTAAGCATCGTTCTCCGACTTACAATCT 724362 36 100.0 30 .................................... TAACCCCATACCTGTATTACCATCGAATGT 724296 36 100.0 30 .................................... TCTTTTAGACCAAACTTAAATAAGGAATTA 724230 36 100.0 30 .................................... ACATCGAAGTATTCTATCATACGTTGAACA 724164 36 100.0 30 .................................... TAACCCCATACCTGTATTACCATCGAATGT 724098 36 100.0 30 .................................... TCTTTTAGACCAAACTTAAATAAGGAATTA 724032 36 100.0 30 .................................... ACATCGAAGTATTCTATCATACGTTGAACA 723966 36 100.0 30 .................................... CATGCTTTCTTTCCTCGTGTCAATGCTCAA 723900 36 100.0 30 .................................... CTATAAAAAGGTATAAAATCATGACAAAGA 723834 36 100.0 30 .................................... CGGATTCACTGTTTATCTTGGTAAAAAGAA 723768 36 100.0 30 .................................... TGGAGTCCCTTGGACTACTGTTTCTGACCT 723702 36 100.0 30 .................................... AAGGCGCTAGACAGCTCCCTTAAAAACAAT 723636 36 100.0 30 .................................... TCTTCGATTAAGTCGATTCTGTAAGCTTGC 723570 36 100.0 30 .................................... ATACAAGGATGGCCGAATTGTTCAAATTAG 723504 36 100.0 29 .................................... CAAGACCACTTTCTCAAATGCCAAAGCGC 723439 36 100.0 30 .................................... TGTTGGATGGGAATGCTACTCCGACACTGG 723373 36 100.0 29 .................................... CAAGCCACGCAGGGTTTACATCATAGGTT 723308 36 100.0 30 .................................... CTTTTCCTGTTATCACAGTCAAAAACAACG 723242 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 52 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAATATGAAATGAAAAAAAAATTCTGTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : AGTCAAGCGATTTTCAACTTGTTCCTTATTTCTCTCTGTCTGCAGGGGGCAGTAATTCAATCAAAAAGCACTGAATGATCAGTGTTTTTTTGTCTTAAAATAGAAACCATTTCAGATGAAAATGGAGGTGTGGTATAATAGGAGAAAGTATAAGTGCTTATTTGAAGGGGAATTTCTCTCCTTATTATGAGTATTAGGATTTAGTTTTCTGAGAAAAATAATGATGTTTGAGCAAAGAAGGAAATGGAATGACAATTTCTGGGACAAGTGGTAACGTTACTTTTGACTATGAAAATGGCTATGTTCTAAAAGCAGAGGGAGAGTTGTTGACTGTTGGTAGCTTTATTGTATATAGGTCAAGCATACAGAATTGGGAGCCACCTTACAATCACATTCCTATCACACAGAACGAGATAGATAAACTTGTCGAGGAAGTGAACTCCATGATGACGGAGCAAACAATCCAGATCGAATTTATCTGAGTTAGAGTAGGAGAAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //