Array 1 217843-223120 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG917868.1 Clostridium bornimense strain M2/40 chromosome M2/40_rep1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 217843 29 100.0 36 ............................. ATTAAAGAAAATAAATTTATAAGTCGTAAGATAAGA 217908 29 100.0 36 ............................. ATATTAGTTCAAAATGCGTAGATATTTATTTTTATT 217973 29 100.0 37 ............................. CGTTTAGGTGCTAATGAGATTAGAAGAAGTTATACAA 218039 29 100.0 38 ............................. TTTATTTACCTTTTAGGCTTGTATATGATTATTCTATG 218106 29 100.0 36 ............................. ATAGATAAATGAGATTTCCCTGCTCCAGGATTACCT 218171 29 100.0 36 ............................. TTAGATAAATATAAAGATGATGTACCAGAAGAGATT 218236 29 100.0 36 ............................. ATTGTATACAAATACAATATACAAACTATACAAACA 218301 29 100.0 38 ............................. ATTACTGTGTTTCTATCATTCTTTGTAAAATTAATCGC 218368 29 100.0 36 ............................. ACAAATTGGAGGGTATGAATATGAGATCAATATTAC 218433 29 100.0 37 ............................. CTTAATTTGAAACCACACTATTCTATTGAAACTTTAA 218499 29 100.0 36 ............................. TGTAAGTATGCCTTGTTGTTCATAATTAATTACTGC 218564 29 100.0 37 ............................. GAGGATATACAATCTCAAATAGATAATAATGCTACGG 218630 29 100.0 36 ............................. TCTAGTAGCATTGTTACTATAGTTCTTATTGTCTTT 218695 29 100.0 36 ............................. GTGGCATCAATATATCCTGTTTTTATTGTATCTTTA 218760 29 100.0 37 ............................. TACAATCTTTTTTATATATTCCGTAATATATTCCATT 218826 29 100.0 36 ............................. TTGGGAAATGCTTATGGAACTTTGGTATGTTTAGGT 218891 29 100.0 37 ............................. TCTATAGTAAAACCATATTGATATTCTCCATAATATC 218957 29 100.0 36 ............................. TATAGTGCTGATGTAATAGGCAATATAGACAACAGT 219022 29 100.0 36 ............................. ATATGAAGCAATTCAAGGTACTGAAGACAACTCATT 219087 29 100.0 38 ............................. TTCTACAAGAGATACTTATAAATTTTATGGTGTGGCTA 219154 29 100.0 37 ............................. ATTAACACTTATATAATATCATACATTGTAATACTTT 219220 29 100.0 36 ............................. AGAGAAACACCAAGCGCAACTTTAACTATTGAATCA 219285 29 100.0 36 ............................. AAGTACGAAAAAGACACAGAATAATCAAACGAACCA 219350 29 100.0 37 ............................. TTGATTTTTAACCCCTCGTGTTTCACGACCCCTTTAC 219416 29 100.0 36 ............................. TTTTCAGTAAGTACTTTTGTATATTTACTTGTCATA 219481 29 100.0 36 ............................. TAAATAGAATTAATATTCCTAAGGCTGTATCCCATG 219546 29 100.0 37 ............................. TCTAAAATGGTTTTATATGCATTAGTAAAATCGTTTG 219612 29 100.0 37 ............................. AAAAATGGTTGTTCTTCTATTAGACAAACTTTTAATC 219678 29 100.0 36 ............................. TCACCAACACTTTTGCTATATACAGATTCAAAATAC 219743 29 100.0 36 ............................. TTTAAAACACTCCTAACTTAAAAACCTTCTTAACTT 219808 29 100.0 37 ............................. TTATCTGTTTCTATACTTATTATTTTATTGTTCTTAT 219874 29 100.0 36 ............................. TTTTACATCTCACCTTTCTCTATTTTGTATTTATTA 219939 29 100.0 36 ............................. GTTATAAGCATATCTATAAATAATTTACTAGATAGA 220004 29 100.0 36 ............................. TGATTTACTAGGGTTTAGAAGGCTATATAGATTATC 220069 29 100.0 37 ............................. CCAACTAGTTTGATTGGATTATAACAAGTGTTTCCAG 220135 29 100.0 36 ............................. TTGTAAACAGGTATTTGTAACCGTTTATCAAAAATA 220200 29 100.0 35 ............................. CTAGAGCTGTATTGATGTCCTGCGTAGTTATTACC 220264 29 100.0 37 ............................. TTGTAAGTTTCAGTGGAATCTATTGATAAAGTGTGAG 220330 29 100.0 36 ............................. TCTATTAATTCGGCATCTCCTGTAGTCGAACCACTA 220395 29 100.0 39 ............................. ATGGTTTCGTTTGTAGCAATGATTGTTTTTTCTACTATT 220463 29 100.0 36 ............................. ATCAAATTACCCAAACACCCATTATGTCGTTGTACT 220528 29 100.0 36 ............................. AAGTTGTTAACTGGTTTAATCAACTTTCACCGGCAG 220593 29 100.0 36 ............................. TTAAAAGCACTCGGCATCAATATGTCAGTTGCTAAT 220658 29 100.0 37 ............................. TAAGAACGGAAAAGACGTACAGGGTGCTATTTTGAAA 220724 29 100.0 37 ............................. TGTGTTAATATTCATGAGTTAATTATAAAATAAAAAA 220790 29 100.0 37 ............................. CCAGGTATTGGAAATGGTGTAAAGGCGGCTATGCCAA 220856 29 100.0 37 ............................. TCATAAGTTTGCATAGAATAACTATAAGTGCCATCAC 220922 29 100.0 37 ............................. TTCCACTTGTTCTTCTTGCTTTGGAACGTTGTTCTTC 220988 29 100.0 37 ............................. CTCTCTATCACTTGGCAATTCATGCATAAGATTTTTT 221054 29 100.0 37 ............................. TAGTCTAATTTAACTTTTATTATAGATTTTTCCATAA 221120 29 100.0 37 ............................. ACGAGATTATAACACGTTTTAATTTTTAATGTCAAGG 221186 29 100.0 36 ............................. GGTAAATAAAAGAAATTACTTATAGTATCCAATTGA 221251 29 100.0 37 ............................. AATACTAAAGTGTTTTCTAGTATACTAAAAAAACTTG 221317 29 100.0 37 ............................. AAGTATTCTAAAAACTTCTCTTCATCTGTTTCTGTTT 221383 29 100.0 36 ............................. GCGGGTAAATCTGTATCAGTAGGAAGATACATTTTA 221448 29 100.0 38 ............................. ATAAATGATGTAGAAAAAGTTGAATATGAAGGTCTTGT 221515 29 100.0 38 ............................. CTCTTTTTTTTTATGTTGTGGGGTGGGGGGTCCCCACG 221582 29 100.0 35 ............................. TTGATTTAACATCTATTGAAGATAAAAAAGAGCGT 221646 29 100.0 36 ............................. ACTATAATACAGCGAGAAACTTATCTAAAAGTCATT 221711 29 100.0 38 ............................. AGAAAAAAGAGCCAGTTGTTAGGAATAATTGTATTATG 221778 29 100.0 37 ............................. TGGTTGGCATACTGTTCTTTAAGGTCTGATATTATTC 221844 29 100.0 37 ............................. GCCAATAAATTTGTTTCTTTACCTATCTCTCGATAAG 221910 29 100.0 36 ............................. AAAACAGCTATAACAAACTTTATCATAACTGTTAAC 221975 29 100.0 37 ............................. TAAGAATAACTACAAATGGGTTGATAAGACAGAACAA 222041 29 100.0 37 ............................. AAACATAAACATGTAAAAGTAGCTGTGCCATCATCAT 222107 29 100.0 37 ............................. TAGTTGCATATGCAACATCAGAACCTAAAGAAGTTTT 222173 29 100.0 37 ............................. TCATCATAATTATTGTTGTTAGGTGTTGTATTACTCT 222239 29 100.0 37 ............................. TACACATAAGAAGAATAAAAATAGCCGCCACCAGTTA 222305 29 100.0 37 ............................. ATTACTATAAACTTAGTATCTATACCCTGTTTTTTGC 222371 29 100.0 36 ............................. AAATCCATACTCTTTTGAGTTGGCTTGTTGTAACTA 222436 29 100.0 37 ............................. TCACCTAACACATCATAAGCTTGTGATCTAGTTAAGC 222502 29 100.0 36 ............................. AGATCATCGAGAATTATTAAATCTGCTTTAGTAATG 222567 29 100.0 37 ............................. TAGATGAAGATGTATATAAGAAACTTTGTGAACTTGC 222633 29 100.0 37 ............................. GGTTTGTAATTCTATGTAATTAAATTCTTTATCTATC 222699 29 100.0 36 ............................. CTAAAAATCAATATCTTCAAATCCTACATTGTACTT 222764 29 100.0 37 ............................. TAGTGTTTTTTGTAATATTCTCTAATGCAATCTTCTA 222830 29 100.0 37 ............................. GATACAGAGGTTAATGTATCTTATAAAGAAGATTGGT 222896 29 100.0 37 ............................. CTAGTATCAGAGGCCGGGAAGAATATTAAATTATAAA 222962 29 100.0 35 ............................. TTTACTATGTTAATACCAATCTTACTCCAATCCAC 223026 29 100.0 37 ............................. TTAGATTCTAAATATCCTTCTTTAAAAGGTGTTTTTG 223092 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ======================================= ================== 81 29 99.9 37 CTTTTATCTTAACTATGAGGAATGTAAAT # Left flank : GATGCTAATTGGTGATGATATATATAAACCATTGAAAGCGTGGTGGTAAAAATGTTTGTTATATTAACTTATGATGTAGGAGAAAAAAGGGTAAATAGAGTAAGAAAAACATTAAAAAAATATTTAACATGGACACAAAATTCTGTATTTGAAGGTCAGATTACTGAGGCAAAGTTACATAAATGTTTAGCTGAAGTTAATAAAAGTTTAGATAAAAATGATGATTCATTATATGTTTATATGGTTGGGAATATACATAATATAAATAAACAAGTAGTAGGGAAAGAAAAAAATTATGACGAATTATTTTTATGATTTTGCAGTAAATGTAGTTTTTAATAAAATTAATTCTAAGTCAGTAATACCAGCGACTTAAGAGGTAATAGTAAGTAATTACAAAAAACTTATTACCGATTTACTGCAAAAAATATATTTTATTGATATAATAGAATTACGTAAAGTATTGATAATACTGGCTTTATAGCAAGCACTAAATTGGG # Right flank : ACAAAAGACACAATATTTTATTATGTTACTTCATATTAATTGAACTTTTGATTATTTAATAATGTAGTTTTTTGATTAATTTGTTCTCTTAAATAACTTTTTAAATTATAAGAGTTTCCGATATATTTTTTAGATAACAATTTTAAATATATAAAAACTCCAGAGAACAATTAGTTCCCTGGAGCTTTCTTTATAATGTTATCTCAGTTGTATTTGTTTCAGTTATTTGTGCACTATCAAGAGCGATAATATCGCCACCTTTGAAAGTGAATACTGCCTTTTCTTTAATTAAGTTCATTACTTCTTTTACTTTAGTTTCATCAAGATTTTCTTTAACCTTAGGTACATTGATAGAAACCTTTGAACCAGTCTCTGTTATAAATTTCATTACTAATGACTTCATTTATAAGATCCCCCTTTCTATTTAACAAGTAAGCTTTCATCAATAATTGCTGCTTTTGATAGTGAACCTTCTTTTAGTTCAGCATAACTATCTACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATCTTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 90443-91518 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG917869.1 Clostridium bornimense strain M2/40 chromosome M2/40_rep2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 90443 30 100.0 36 .............................. GCAACTTTATAATTTTCATATTCTTTAGTATTTTGC 90509 30 100.0 35 .............................. TTTGTAAATTTTAATGTGCCTAATAATTCAATAGT 90574 30 100.0 36 .............................. TTGTTGTCCCTAATTCTTCGAATAAATAGCCATGCC 90640 30 100.0 36 .............................. CCTCACTTTTTGCATAAAAAAAGAACTAGTAAAAAC 90706 30 100.0 36 .............................. GTAGAATTAGATAAGTTCTAACTCTACTGAATAATA 90772 30 100.0 34 .............................. ATGGTAAGGATATAAACTTCTTAATCGTAGCTAG 90836 30 100.0 36 .............................. TCTTGATGATAAGTGGCAAGAGGTTGAACCTCCTAC 90902 30 100.0 34 .............................. TTTAATGATGGAGTTAAGTAGTGGAGCGACTATT 90966 30 100.0 35 .............................. ACTACAGGATGTTCAAGTTGTAGTAGGATGGCTAC 91031 30 100.0 36 .............................. TTACACCAGAAGCAGTGGCACAATATAGCGGTTCTG 91097 30 100.0 35 .............................. TAAAGTGGATTATGTGGTAAATTATATTTTTTATG 91162 30 100.0 35 .............................. AAACTATAATAACTATTATCTCCTTGCCAACTCTC 91227 30 100.0 36 .............................. TAATCACTTAATTTATCTTTTGCAGTTGCTACAGTT 91293 30 100.0 36 .............................. TTAACAAGGTTTTTCATTTCCTCATATTGGAAAAGG 91359 30 100.0 35 .............................. TATTGGAAAAGGTAATCCATGTTTAGTTTATCACT 91424 30 100.0 36 .............................. CATCTACTTTTACTAAAATATCTAACAGTAGTTTTA 91490 29 83.3 0 ...............AA....-......TG | ========== ====== ====== ====== ============================== ==================================== ================== 17 30 99.0 36 GTTGAACAATAACATGTGATGTTTTTAAAT # Left flank : TTCAACAGTTTAAAAGAGGCGATGTTGATAATGGTTTAATTAGGGAATGTGAAGGTTCTGGATTAGGGTTATATATTGTTCGACGTATAGTTGAGCTTCATAACGGAGAGATAAATATTATAAGTGAAGTTGGTAAAGGAACTGAGGTTATTTTCAAATTACCTTTATATACTATTGAGGGCGATAGTAGTGGAGTTTTGGCTACAGATATGTCTTCAGTGGATTACAAAGCTGATATTGAATTCTCGGACTTAAATTAAGTTAAATGAAATATTTATTTTTATGAGTTTTTTGTTAGTTTTGTAGGAATTTAAATTGGTTTTTGTAATATATAAAGTGGATATGTGCTAGAGTATTGAATTTTACCAGGCGGTTTTAGCAAAATAGTTATATAACTGCATTTATGAAAAAGCTTCTCAGCTGGTAAAAATTTTGATAAACCTTTATGAATACAGCTTTTATGTCGATAGTTATTTTAGACGAACGTGAGAGATACTGTG # Right flank : GTAACATTTTAAAAGACCATAAGGTCTTTTTCTTTTTGATTATCGGTTAAAGTAAATAAGTTAAGGACACCTTCTAAGTTACGTTTATCAAGAGTAAATATTAAAACATTGAGTTAATCCAATATGTTTAATATAATACATATGTATAATATGTAAGTGCTTTTTTAATGTTATAAAAGACTATGAAATCTTATATAAAGGCTGAATTGAATAGACCTATTGGTCTAGCCTTTACAACGATTTATAGTCTTTTTTATTTTGCTTTTAGGCACAAACATATTAAACTAACTATACTTATATCTTTTACTCTAATTAGTTATTGTAATGCATATAAAAATATACCGTATTAGTAGTTAAATTAAACTATCTATACGGTATATTTAATACTATATTTAAATTAACGTGAGTCTAGTTTTTATTTTTAAGAAGTTTTAAAACCTAATACCAATACGGAGAAAGGGATTAGAGATAATTGAATTTACAAAATATGTTACAATGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGTGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //