Array 1 29109-28775 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONG01000005.1 Streptomyces alni strain CGMCC 4.3510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29108 29 100.0 32 ............................. TGGCCACGCCCTTGACCCGGTAGGACGCCCGC 29047 29 100.0 32 ............................. GGCGGCACGGCCGACTCCTTCGTCACCGTCAT 28986 29 100.0 32 ............................. GAGTGGGAGCGCGAGGAGCGAACTGTCGGCGC 28925 29 100.0 32 ............................. AACGGCGGCGGAGTCTCGACCGCCAAGATCGA 28864 29 96.6 32 .................G........... GTACGGACCGCCCTGCACCTGATCGGTCACGC 28803 29 86.2 0 .................G.....C.T..G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 CTGCTCCCCGCGCACGCAGGGATGGCCCC # Left flank : CGGCCCCAGGAGCACCACGACCAGGACGTCGATAGCCACGGGATCTCCTCGGGTCCGGGCAGGCCGGGCTCGGACGGTGCCGGCGTCAGTGCCGCTGCCGGAGGGCCCCGGGGTGCGGATCGGCTCCGCGACCGGAGCGGAGGTCAACGCCACCGACGAGCAACCTTCGTCCGCTTGCGGGGTGCTGCCCGATGACAGGTGCGGAGGGCACCCTGGTCCTGTGCGACAGTTGCGAGCCGTGCCCATGACGCTGACGCTGCCCCACGTCCTCGTGACCCGTCGCAGAAGGACGGCTGCCGGCGGGACGGGTGGATTCACATGCAAGCGTGCGATGACGCCAGCGCGGCTCTTGAGCAAGCGCCCGGCGCTTCCCCCATCGGCCGTACGCTGTTCGCTGGGGCACAATGTGTCGACGCCGTGCGGGATTTGCGCCTTTGCGGCTTCCTCCGAAGTTGGTTCCACCCGGCCCGTGGCGACACAATGCCCCCAGGTCAAGCAGT # Right flank : GTCTGGGGAGGGTTGGCCGGCGAGGAGCGAGGCGGCGGCCGCGCGGGCGGTCGATGGGTGGAGGGGCCGCTACGGCGCGTTCTGCGGCCGGCACCGGCAAATGTCGTGGGCCGCGCGGACGAGGGCGGCGTTGTCCGGGGCGGGGGTGCCGTCGGGGAGGTGGAGCACGTCTTCAAGGCCGATGCGGGCGTCCAGGCGGCGGGCGGCCGCGAGCCGCAGGACGGGCCACGCGGCGGCGTCCTCACCGTGCAGGAGAATCGGCGCGAGCGCCGGTCCGAGGTCGTCCAGCAGGCCGGCTGCCGCCCGGAGCGCGTCCCGCGGCGAGGTCTCGGTGACCTCGGCCAGCACGCGCAGGACCCGGCGGGACCCGGACCAGTCCAGGAAGCGCCGCGCCGCGGACGTACCGGAGTAGATGCCGGCCTCGACGCCGATCCCCCGGTCCAGCAGGGCGGCGGCGACCTCGGCGGCGCCGTCCTCGTGCCAGTTCACGGAAGCGTGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCAGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 411517-411850 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONG01000002.1 Streptomyces alni strain CGMCC 4.3510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 411517 29 100.0 32 ............................. GTCGGCAACGAGTTGCGAGACGGCTGGCTCGG 411578 29 96.6 31 ............................A GATCCGCCCGCTGGCCGCCGGTGATCCACTT 411638 29 100.0 32 ............................. AAGCTCGGCCAGGCGCTCGTCACCATCGGCGT 411699 29 100.0 32 ............................. GAGTCCGAGATCGCCACCGCCATCGGCGTCCA 411760 29 100.0 32 ............................. CTGCGTGCGGATATCGACGCGGCTGAGGCGAC 411821 29 93.1 0 ...........C...............G. | C [411846] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGCTCCCCGCACCCGCGGGGCTGTTCCC # Left flank : CGTCGAGACCCGGCCCCACCTGTTGTGCGTCCCGGGCGTGTGCCTCGGATTCCCACTGTCGACCAGCGCGTATGGACCAGACGTGGACCAGGGTTCACGCTCACTCATGAACAAACACCCCCTCGGTCTCTGTCCAGCGCATGCGCCCGCTCGGGGACTGCACCTTCGGGCGTCTCCCAACGAGGCCGCAACCGCGCCGTCTTCCCGCTCCATCAATCCGTTCCCAGAGGTCGGTCGACCGCGAAGCCCCGGGGGGCAGCGCTACTGTCGTGGCTTCATCTCACTCCGGCTTCGGCCTGTTGCCTGACGCCGACTCAGTGCGAGAGTGATGGGGGATAGTGCGTAGTCGTCCGATCATGCGGCGTGCAGGACAGCGGGCGGGGTTGGACTGACCGTGGAGGTAGGGGCAGGTCTCCGACGAAATGATGGTCGAAATGTCCGATTCTCTCAACGTAAGTAAAATCAGCTCTCGCCTCGCATAAACCGCCAGGTCATTTACT # Right flank : CGGCCCTAGGGCGTTTCTTTCGGATCATCTTGCTGACCAGATATGGATGGCGGCGAGGTGGAGTCCGGCGAGGTAGATGGTGGCGGTCTTGTCGTAGCGGGTGGCGAGGCCGCGCCACTGCTTGAGCTTGTTGATGCACCGTTCGACGGTGTTGCGTTGTTTGTAGGCGTCGCGGTCGAAGGCCGGCGGACGGCCGCCGCGGCTGCCGAGCCGTTTGCGGTTTGCGGCCTGGTCCGCGGGCTGCGGGATCACTGTGCGGATCCCTCGTCGTTGCAGATGGGACCGGATGGCGCGGGAGGAGTACGCCTTGTCCGCCAGGACCACATCTGGTGTCGTCCGCGGCCGCCCTGTCGGTCTTGGCACCCGTAGGCGGGCCATGACCTGGGTGAACGCAGGCGCGTCGCCAGCCTGTCCCGGCGTGAGGACGAAGCCCAAGGGTCGGCATCGGCCGTCCGTAACGAGGTGGATCTTGGTGGTCAGTCCGCCGCGGGACCGTCCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 433959-434469 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONG01000002.1 Streptomyces alni strain CGMCC 4.3510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================= ================== 433959 29 100.0 32 ............................. AGTCGCGCAGGACACCGACGATCGGTAGATCC 434020 29 100.0 32 ............................. GCCAGCACCGCAAGCAGTGGGGCAAGGACGCC 434081 29 100.0 32 ............................. GCCTTGAATCCGGCCACGGTCCCCATGATGAG 434142 29 96.6 32 ..............T.............. GTCGTGATGCTCCTGGTCGTCGCCGTTGTGCT 434203 29 93.1 209 ........................C...T CCGGGCTGCCTGGGTGGTTGTCAAAGCCGAGCGGTGGTCGGCTTCGTCGTCGCTCAGAGGCGTACCGGACGTGGCAGGCGGGGCCTAGCTGACAGCAGGGGCGTGATGAATGGAGGAGTTCCAGATTCGATCAGTTCGACCTGCGGGCACTCCTCTCCTCGAAAGGAGAGGACCCCTGGACACAGGGACGCCTTAAGCGAAGGCGGCTA 434441 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================= ================== 6 29 97.1 68 GTGCTCCCCGCACCCGCGGGGCTGTTCCC # Left flank : GCAGCGGTGAACGCCCAGGTGGGGCCGGGTCTCGACACAGTCGAACCCCGGCCCCACCTGTTGTGCGTCCCGGGTGTGTGCCGCGGATTCCCACTGTCGACCAGCGCGTGTGGACCAGACGTGGACGAGGGTTCACGGTCCCTCATGAACAAGCACCACCTCGGTCCCTGTCCAGCGCAAGCGCCCGCTTTGGGACTGCGCCTTCGGGCGTCTCCCAACGAGGCCGCAACTGCGCCGTCTTCCGGCTCCATCAATCCGTTCCCGGAGGTCGGTCGACCGCGGGGCCCCGGGAGTCAGCGCCACTGTCGCGGCTTCATCTCACTCCGGCTTCGGCCTGTTGCCTGACGCCGGCTCAGTGCGAGAATGGTGGGGGATAGTGCGTAGTCGTCCGATCATGCGGCGTGCAGGACAGCGGGCGGGGTTGGACTGACCGTGGAGGTAGGGGCAGGTCTCCGAGTAAAATCAGCTCTCGCCTCGCATAAAGCGCCAGGTCATTTACT # Right flank : ATTTCGCGATATCAGCGAGTCCGTGGAGATGCTGAGTCGATAATGCTCTAGCGTGGCCTCAATGCTTCAAACTGGAGATATGGACGCCTAGGTGATCTTGCTTGGGACTAGGCGATTGCCCATTTGAGTGGACCGCCTCGGTCGGTCGTTTCCCCGCCGTCGAGCGTTGAGTTGAACTCAGCGGACCTACTGTCCTTGCACGACAAGGTCAAGGAAAAGAAGCGGGCCGGAACCTGGCTCCTCTCATGGCGAGAGAGGGTTTCAGCCAGGTCCGACCCCTGGTGTCGCGAATTGAGCGACGCATTAGGTGCTTTGACTCCCTCCCGTGGCCTTGGCTGGTCTCCGTGGTGACCCTCGTGGTTACACCTCAGGGGAGTCCGGTCGGCCAATTGGTCGCGCTGGGTATCGCGGGGGCGTGCATCTTCGTTGTTTTGGCGGAGTCGCAAACCGTGCAGTCGATGCCGCAGGCATAACGCGGAGGTCGTCCAATCGCCCGTTGC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 444723-445549 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONG01000002.1 Streptomyces alni strain CGMCC 4.3510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 444723 29 100.0 32 ............................. TGGTCGAGGCCGGTAAGACCCCGTTCGTCCCC 444784 29 100.0 32 ............................. CGTGCCGGCCTCACCCTGGAGGAAGCGGGTGA 444845 29 100.0 32 ............................. ACCGCCCGCGCGGCGGCCGGTACCAGCCAGCC 444906 29 100.0 32 ............................. CGGAACTCCGCGTCGTCCTCGCCGAAGTCGAG 444967 29 100.0 32 ............................. CTGAGCAACGCGGCCGTTTTCCGGCTGGAATT 445028 29 100.0 32 ............................. CCGCGGGAAGGGTGGCCACCTCCCACGTTCCG 445089 29 100.0 32 ............................. AGCGCGTAGAGCAACTGAATGGCGCCGGGTGT 445150 29 100.0 34 ............................. TAGGGGTTGTCGGCCCCCGGCGTGTAGACGTCGG 445213 29 100.0 32 ............................. GGCACTGCTATCAAATCTATGCGTGAGCTGCG 445274 29 100.0 32 ............................. GTCAAGCTGGGAAAGACGCAGGTCGGCGGGCG 445335 29 89.7 33 ........T...AA............... TTGAACACGGCGTAGGGGCCACAGCAGGACAAG 445397 29 100.0 32 ............................. GCCGCCGCGAGCTGCCGCTCGGACAGCGCCGG 445458 29 86.2 32 ...........AC.C.T............ GAGTGGCGGCACATCGCCAGCGGCGGCCGGGC 445519 29 82.8 0 .............CG.G....G......T | A,G [445530,445545] ========== ====== ====== ====== ============================= ================================== ================== 14 29 97.0 32 GTGCTCCCCGCGGGTGCGGGGTTGTTCCC # Left flank : TGAGGGCGGGGATCTCTCGGTGACTGTCATCGTCCTCACCAACTGCCCGGCCGGCCTGCGCGGCTTCCTGACCCGCTGGCTCCTGGAGATCTCTCCCGGCGTCTTCCTCGGCACGCCCTCCGCCCGCCTCCGCGACCTCATCTGGGCCGAGGTCCGCCAATACGCCCACCAGGGCCGCGCCCTCCTCGCCTACCAAACCGACACCGAGCAGGGCTACACCTTCGAGACCCACGACCACGCCTGGCACCCCATCGACCACGAGGGCCTCACCCTCATACACCGCCCCCACCCAGGCCGCTCCTCCCGAGGCCCGACCGCCCCGCCGTCCACCGGTTGGAGCAAGGCAGCGAAGCGCCGCCGCTTCGGTGGCGGGCGCTGAGCGGTGGGCCGGCGGCCGGCGGGGCGCGTAGGGCGAGCGATATAGGAGGACCGATATGCCCGAATCTCTCAAGCTGAGCAAAATCCAGGTCCCGGCGCCCTGAAGCCGCAGGTCGCCCACT # Right flank : TCAGCAGGGTGTCCGTGCCTGCAACGGTCGGCGTGTGCTTCCCGCTGGCGCGGTGTTTCGGTGTGGTCCACCTGTGGCCCAGACGCCGCCTCTCTGCGAGTCAATGCTGAGCTTTTGCCAGGTCAGGGATGCGATCGGTCCGCCCTGCACAGCGGTCTTGAAAACCGTCGTGGCAGCGATGTCACCGTGGGTTCAAATTCCACAGCCTCCGCGACAGCGGTGAACGCCCGGCCCCACCCGGGCGTTCTGGTCCTGCGGGGTGTTTTTCCTGAGGGGATGATGTGGGGGGAGCGGGAGGAGGTGGGGTTGTGGAGATGGGTGTGGACGGTTCGGGGGTGCTGACGGTGGAGGAGGCGTTTCGGGCCGCGGTTCGGATGGTCGAGCAGTACGTCGATCTTGAGGAGAGGCCCGACGAGGCTTTGGTGCTGCTGTTGCAGTACATGGAGTCGGATCCGGCTCGGTGGACGGACTGGCTCGAGGCCGTTCGGTGGGGGCTCGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //