Array 1 255352-253919 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUP01000006.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_m24 m24_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255351 29 100.0 32 ............................. GACCTGGCTATGCAAACAACGCACGCGCGGCT 255290 29 96.6 32 ............................T GGCCGGTACATGCCAGAACGCCGGTTACGTCA 255229 29 100.0 32 ............................. CCAATATTACGGGAACTATAAACGCAACTAGC 255168 29 100.0 32 ............................. ATGAGTTGATGTGCCGCGCTGCGTCAGACACA 255107 29 100.0 32 ............................. TTGGAAGCCGCAGAGCAGGAGCGGGAAAACTG 255046 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 254985 29 100.0 32 ............................. TCGGCATCTGTGCCATCCTGCCCTCGCGGAAC 254924 29 100.0 32 ............................. GGTATGATATTTGTGAAAACAAACATGTACTC 254863 29 100.0 32 ............................. TCATTGAAGAACCAACACCGGCACTATGTCAA 254802 29 100.0 32 ............................. CGGATATTCGTCTGATTGGCGACCTGCGCCGC 254741 29 100.0 32 ............................. GGTTTCTCTCGCCTGGATATTGACAGGTGAGA 254680 29 100.0 32 ............................. GCGCTGGGCTGAGCAGACACGCTTCGGACAGA 254619 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 254558 29 100.0 32 ............................. TCGCAGCGAGTACCGGTATCGCCAGTGCGGTA 254497 29 100.0 32 ............................. AATATGAGCGGATTAGGATATATTCGAGGCGC 254436 29 100.0 32 ............................. TGTCGGAATATGCAGGCTGATTTTTCGTCTGC 254375 29 100.0 32 ............................. GTTCCGGTAATATTGGCTTTTTTAGCTATCAA 254314 29 100.0 32 ............................. GTTCTCAACGGGTGATGTAAATCACCAGAAAG 254253 29 100.0 32 ............................. CCGCTCCATTGCTCTTTACTTATTGTCATCAC 254192 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 254131 29 100.0 32 ............................. TTATTTGTCCGCCGTACCAGGAACGTTTCGCC 254070 29 100.0 32 ............................. GAAATGGAAGATGGCGAGACCGAGGAAACCGA 254009 29 100.0 32 ............................. TTTATGGACGAGTTCTGGAAATGGTTAGCTGA 253948 29 96.6 0 ............T................ | A [253921] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAAGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 273595-271615 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUP01000006.1 Salmonella enterica subsp. enterica serovar Brancaster strain sg_m24 m24_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273594 29 96.6 32 ............................A GTACTCCGCGTGGGACAATATCGGCAAAATGG 273533 29 100.0 32 ............................. TTTTCGATATTATGCCGCTCGGCCCAATAGTC 273472 29 100.0 32 ............................. ACGACGCTCGAACTGAACGAATTGCTACCCAA 273411 29 100.0 32 ............................. GCATCCAAAATTCTTCAACAATAGTCAACATC 273350 29 100.0 32 ............................. ATTATTCGTCAATTGCCGTTGCAAATAACGGC 273289 29 100.0 32 ............................. CCCGCCGATGCACTCAAAATTAGCCGCCTGAT 273228 29 100.0 32 ............................. ACGCCCTCGTCATCCTGCATGATGTCCATCAC 273167 29 100.0 32 ............................. GAGACCACACGCACTGCGTAAAGTTTTCAGGT 273106 29 100.0 32 ............................. TTAGTCCGGTGACGTACCCCGCGTACCGCGCC 273045 29 100.0 32 ............................. TCCGTGTACCACACGAAATTGCTGACGCTGTG 272984 29 100.0 32 ............................. CATTTAATGCAAAGTAAATCGACCAATAAATA 272923 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 272862 29 100.0 32 ............................. GAGCGCCTGCAATCAACGTTTACCGGCTTAAA 272801 29 100.0 32 ............................. ACGAACTGTTATTCTGGCTGCTGTCACAGTCA 272740 29 100.0 32 ............................. CTGTCGTCGCCGTCACTGGGTAAAGGCTGGTG 272679 29 96.6 32 ............................C GCTTCCACGGATTTAACTGCATTCTCGGCCCC 272618 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 272557 29 100.0 32 ............................. GGCGTTTTGTCATACTCGTCCGGTACTCTGCA 272496 29 100.0 32 ............................. TATTAAAAAACCAAAAAGACAAAATGCAATTT 272435 29 100.0 32 ............................. GCAAAAAATGCCCGGATAGGGTTTCCGGCGTG 272374 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 272313 29 100.0 32 ............................. TCTGGCCCATGCAGGCTTTAATTGAGAATGCA 272252 29 96.6 32 .............T............... AATTAGAGCTGGCGCGTATAGCGCTGGCAGCG 272191 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 272130 29 100.0 32 ............................. TTCTCTACTACAAATCAGATCTGGACGCGTTT 272069 29 100.0 32 ............................. ATTCCAGCTATATGACACCGACGATCCTGCGC 272008 29 100.0 32 ............................. GGGCACATAATCCACACCCAACCCTAAACCAA 271947 29 100.0 32 ............................. CCGCCACCGTCCGTTATTTCGGTGCGCTGATA 271886 29 100.0 32 ............................. CTCTGAGTGCATTAACCACAATAATTGCTGAT 271825 29 100.0 32 ............................. ATTTTCCGGGGGCCAACTTTGACCGTTCGCGG 271764 29 100.0 32 ............................. GCTGGCCGTATGCGCCTGGAATATCTAATCAT 271703 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 271642 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //