Array 1 418992-420300 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYN01000001.1 Salmonella enterica subsp. enterica serovar Monschaui strain 95-0422 NODE_1_length_653374_cov_4.68725, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 418992 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 419053 29 100.0 32 ............................. TCCACCGGGAAAATAGTCCAAATGGCTAACGC 419114 29 100.0 32 ............................. GTTATGGGATGAGGACGACGTTGAAAAAGCAG 419175 29 100.0 32 ............................. AATCCCTCATTCCGTATCGCGCCAGCGTGTCG 419236 29 100.0 32 ............................. AATTACGATCCACGCAATATAGAGCGAAATAA 419297 29 96.6 32 ............................C GCTCTTTTGAACCTGCTGCATTACCTGGTCAG 419358 29 100.0 32 ............................. GATTACCGGGGCCTGTTGAAATCAACGGGCGA 419419 29 100.0 32 ............................. CATCAGCATGGAATACAAATTCGTTGCCATCA 419480 29 100.0 32 ............................. AGATTTTCGAACTGTATACTGGGGCGCTTGAG 419541 29 100.0 32 ............................. CCATGATGGATAGCGCGGAAATTGCCGAGGTT 419602 29 100.0 32 ............................. CACAATTTTACCGACGCTCCTGTAGAGCAAAT 419663 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 419724 29 100.0 32 ............................. CGCCGCAAAAAGTGGGCCGCATTGGCGTTTAT 419785 29 100.0 32 ............................. GCGCTTACTTTGTTGCTAACCGAATGCTGGCC 419846 29 100.0 32 ............................. GCAAAACTAACGAAGAAAGAACAGGCCTGGAT 419907 29 100.0 32 ............................. GTTATATGTGGAACATCCCAGGAAAACGCTGG 419968 29 96.6 32 ................T............ CGACCACAGGGCGTAGATTCCAGGGTCAATTG 420029 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 420090 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 420151 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 420212 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 420273 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 436972-439808 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYN01000001.1 Salmonella enterica subsp. enterica serovar Monschaui strain 95-0422 NODE_1_length_653374_cov_4.68725, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 436972 29 100.0 32 ............................. GTCATAGTCAGCCATTAATGCCTGACGTGTAC 437033 29 100.0 32 ............................. CCCTACATTTGCCAGTTGACGGATAGAGTTAT 437094 29 100.0 32 ............................. CTAATATCACCGGAACCATAAACGCAACCTCC 437155 29 100.0 32 ............................. GCAAAGGCGAGCGCCACCGACGTTGCCGCCGC 437216 29 100.0 32 ............................. ATAAAAAACAGCAGGATTAGTCCTTGAGCTAA 437277 29 100.0 32 ............................. CAAAAAAACGCTAACGCACAACGGGAAACAGG 437338 29 100.0 32 ............................. GGGCTTTATGGAGACGTTCAAATTCACCAAAT 437399 29 100.0 32 ............................. ATAAAATTAAAAATGTGACCCATGTCAATAAA 437460 29 100.0 32 ............................. AACGGCCTGCACCGCCTGATACTCCTCCAGTT 437521 29 100.0 32 ............................. GTGAGTGGTTATCTTGTCAGTGATGTAATTGC 437582 29 100.0 32 ............................. GTGTATTTAACGAATGTAGGTACTTAAACATA 437643 29 100.0 32 ............................. GCTCATGACGATAGAAAGCCGCCAATAAAACT 437704 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 437765 29 100.0 32 ............................. CTTTCCGGGCGCGAAGTTGATACCAGCCCCGG 437826 29 100.0 32 ............................. GCTCTGCGGTTGATATGCGCCGAGCGTGGCGC 437887 29 100.0 32 ............................. GTCGGCGTTCACACCGCTGAGGTTGTTTTCGC 437948 29 100.0 32 ............................. CATGATGTATCCGTTAAATCTATCAATTGTCG 438009 29 100.0 32 ............................. GTCTATATACCGGATACGCACGACGAAGACGG 438070 29 100.0 32 ............................. AACGCTGCGGACATCGCACGAATGATACTGAC 438131 29 100.0 32 ............................. AATTGCATGAGGCGCGGGAACTGGCGAAACAA 438192 29 100.0 32 ............................. CTACATTGACCGAAATTTAAATTTCCGCGACG 438253 29 100.0 32 ............................. CACACCACGCGATTGTTCCGACTACAAAAAGC 438314 29 100.0 32 ............................. ATGGTTCTCTTGTCTTTAAGGACAAAGGGGAT 438375 29 100.0 32 ............................. ATGATTCTTTAGCCATTAATCACTGAGAAGGT 438436 29 100.0 32 ............................. CCGTAATCAATAAAGCGTGTAGCAGTCTGGTC 438497 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 438558 29 96.6 32 ............................T TAAGTGGATATTCATCGAACGCTGGAAATTCA 438619 29 100.0 32 ............................. CGCGGTGACAACAAATTGTCCGGTGCTTTCGC 438680 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 438741 29 100.0 32 ............................. GTCAGTATACAAACAACACGCGAGGCGCTCAA 438802 29 100.0 32 ............................. GTGAAAATGCTGGATGCTGGGTCTATGGCAAA 438863 29 96.6 32 ............................T AGTGCGATGATCGCAACGCCATGCGCCGTGTC 438924 29 96.6 33 .............T............... ATACCCCCGCGACTTTACTCAGCGCGTTTTGGC 438986 29 100.0 32 ............................. CGTTATCTTTTGAGCAGAGCACGCCGGGGACG 439047 29 100.0 32 ............................. GATGGATGATATTTTTTTAAAGGCATTGCGGC 439108 29 100.0 32 ............................. CGATGGCCGATATGGCTAAAACGGCGCTTGAG 439169 29 100.0 32 ............................. TAATGGGAAAAACGGAAAATGTTAATGGTGCA 439230 29 100.0 32 ............................. GACTGGCTAATCACGGTTAACGCCGTGCCGGT 439291 29 100.0 32 ............................. AGATCTGTTTAACTGGTGGATCTGTAGTTACT 439352 29 100.0 32 ............................. CACCAGGTAACAATATCGTCCCCGACCTTTAT 439413 29 100.0 32 ............................. TTAACGGGACAAGAAGCGCATATCGGTATGTT 439474 29 100.0 32 ............................. GCCCTCGTGCGTTTTTAAAGGGGGTTTAATAG 439535 29 100.0 32 ............................. CAACTGGTGATACGGTTATGTCTCGTATCGCA 439596 29 100.0 32 ............................. TTGATCGGGATTCTGGCCGCACTGGGTGCTGC 439657 29 100.0 32 ............................. GATAACAGCCAGGCGAATACCGCGACGGCAAC 439718 29 100.0 32 ............................. TACCCGCTTGCTTTATGATGCCGAACTCAGAT 439779 29 96.6 0 ............T................ | A [439806] ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //