Array 1 28257-25843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRBG010000045.1 Streptococcus thermophilus strain Roque89 Contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 28256 36 100.0 30 .................................... TCATCAGCACCTGGAAACCCTGTTGGAAAT 28190 36 100.0 30 .................................... AATCTAACTTACGTTGATGAAGAGTGATAA 28124 36 100.0 30 .................................... ATGGAGTAAAGATATTCCAACAGTTAATCC 28058 36 100.0 30 .................................... TAGACATGCTGATGATGGTACTGGTGTCTT 27992 36 100.0 30 .................................... GGCAAGTTCAGGTGGTGCAGGTGGACACGT 27926 36 100.0 30 .................................... GACCCCATTCTGGAGCCAATCAAATCCGAT 27860 36 100.0 30 .................................... ACAATACGTAACAACCAACTACAACGCAAA 27794 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 27728 36 100.0 30 .................................... CTTAGTCAGCGCTGGTATCACTAAGGGCAT 27662 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 27596 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 27530 36 100.0 30 .................................... TAGTATTGTTATTTTCCAAAAAGAGAGGGC 27464 36 100.0 30 .................................... TTCTCTCAAAGTGTTGAGAAGTCCCTTTAA 27398 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 27332 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 27266 36 100.0 30 .................................... AATGTATCATTCCATAGTGCTTTCAACGAG 27200 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCA 27134 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 27068 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 27002 36 100.0 30 .................................... ATTCCATTACAGTTGTTATGGTAAAAATGA 26936 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 26870 36 100.0 30 .................................... TGCTTGTGCTTTTGTAATTTTTGCTACTGT 26804 36 100.0 30 .................................... GCTATGATGACTTGCTCAGTATGTTTAGTT 26738 36 100.0 30 .................................... CTTTGAAGAAGTATTTCAAAGGCAATAAGA 26672 36 100.0 30 .................................... TACCTCCCTGGCAACTTGCCCTAAATAGTT 26606 36 100.0 30 .................................... GTCAAATACCATCTTGTTGTTCTCTATTTT 26540 36 100.0 30 .................................... CCAAGGGATTCAAGGACCACAAGGCCCTCA 26474 36 100.0 30 .................................... CTCAATGGTTGAGGATTATCTTGAAAGTAA 26408 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 26342 36 100.0 32 .................................... CTTAAGAGTTACCCTCTTAATGGTCTTAAGTA 26274 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 26208 36 100.0 30 .................................... ATTCGCCAAAATCGCACCGTTAACACTCAA 26142 36 100.0 30 .................................... GCATTGACAGGCGATATCGTGTTGATGTCT 26076 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 26010 36 100.0 30 .................................... GCATTGACAGGCGATATCGTGTTGATGTCT 25944 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 25878 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 37 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 7258-7653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRBG010000026.1 Streptococcus thermophilus strain Roque89 Contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 7258 36 100.0 38 .................................... GCGTGCTTCGTATTTGCGTTCATTTTCTTCCCATGATG 7332 36 100.0 37 .................................... AAACTAGTTTTCATCAACTATGAAGGTTTCAAGTCCG 7405 36 97.2 35 .........A.......................... CAATCCACAATCTAATGCGATACCCACGGTAATTA 7476 36 100.0 36 .................................... TGTCCGCTGGATATTTATCGCTTTAGTAATTTTCAT 7548 36 100.0 34 .................................... GGGTGTGCTGCTCTTAATACTTCAATTTCCTTGC 7618 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 99.5 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATTGAGGGTTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTGATGATGCAAAAAGAAGTAGCGGACCGTATCTCAGCAGAACCAAATACCAAAGCTTACGGTTCACTTTCAATTGCGGTGCAATACTACATGACAGCAAAAATTGCTTTCATCGTGCCACGTACAGTCTTTGTGCCAGCGCCGAACGTTGATTCAGCCATCCTCAAGATGACCCGCCGTGAACAACCACTTGTTCAAGTTAAAGACGAAGATTTCTTCTTCCGCATTGCTAAAATCAGTTTTGTTCACCGTCGTAAAATCCTTTGGAACAACTTGACAAGTCACTTCGGGAAGTCAGAAGAGGTCAAGACCAAATTAGAAAAGGCTCTGGAAGCAGCTGGTATCAAGCCGTCCATTCGTGGAGAAGCTTTATCTATTGCCGATTTTGCAAGATTGGCGGATGCCTTAAAAGAAGTCGGATTATAATGAAGAGACCCCAGCCATTTATTGTGGTTGGGGTTTAAAAATCTTTTAATAGCTTGTCTTTGTAATAATTAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 11548-14487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRBG010000017.1 Streptococcus thermophilus strain Roque89 Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 11548 36 100.0 30 .................................... TCTGCACAGATTACACAAAACAAAAACAAA 11614 36 100.0 30 .................................... TTGAATGAATATTTATATTATACAACATCT 11680 36 100.0 30 .................................... CATAAGGCTGATAACGCTACTGTAATGCAC 11746 36 100.0 32 .................................... TCATTACCCCTCTCCGTTTGGTATAGACACCC 11814 36 100.0 30 .................................... ACGAATATCCAAACAATTAAGAAATGAGGA 11880 36 100.0 30 .................................... AAATTGCCAATATTTTAGATTAAACGTGTT 11946 36 100.0 30 .................................... ATTTTGCAACCTTCGAACTTGTAAATGGCT 12012 36 100.0 30 .................................... ATAGCCATATCTTTTCTAAAACGTCCGCGT 12078 36 100.0 30 .................................... CCAAACATGCAATTAACGAGAATACTCCTG 12144 36 100.0 30 .................................... TAACCCCAAGTGGTGGGAGACATATCTACT 12210 36 100.0 30 .................................... TAACCCCTTATTTTTTTGGCACAGGCACAT 12276 36 100.0 30 .................................... AAAACATCAAAAACGGCGCTAAAAGCGGCA 12342 36 100.0 31 .................................... TCATCAATTATTTTCGACCATCGATGATGTC 12409 36 100.0 31 .................................... CATTGATGAGTATTATTGAGAAACTTCACGA 12476 36 100.0 30 .................................... CTGTGGCAGCGTGGGCGGGTTTAATAGCAC 12542 36 100.0 30 .................................... CTTGACTAACACTTCAGGGTTTACTGCACT 12608 36 100.0 30 .................................... TTCAAACATAAACAAAGCGTATTTATTATC 12674 36 100.0 30 .................................... ATCAGATATTGGTTTTTGTTGAGGCGTACT 12740 36 100.0 30 .................................... CTTGAAATTTCTGTTTAACTGCTGGTGTGT 12806 36 100.0 30 .................................... ATTAAATAAACCACAAAAAACTACCTTATT 12872 36 100.0 30 .................................... AAAAAATATTTTTGACTATTTAAAAGATCA 12938 36 100.0 30 .................................... CTGAGTGCCTAAGCATTGCATATGAAGAGA 13004 36 100.0 30 .................................... CGGTATTGATTGAATCGCAAACTCTTGACC 13070 36 100.0 30 .................................... TCTCAACCTCGTAGCCAAAGACCCACGCTT 13136 36 100.0 30 .................................... AATATCCTTGCATGGTTGTCTGGTTGGATT 13202 36 100.0 30 .................................... AAGCAGACTTCAAGGACGCTCAAAGATATT 13268 36 100.0 30 .................................... TAGTTTTATAGTATTGAAAAAATCGACCCT 13334 36 100.0 30 .................................... TAAATACTAGAAACTGCCGAAGTAAATCCC 13400 36 100.0 30 .................................... ATGAGACATTGAGATTAGAGACAGAAAGTA 13466 36 100.0 30 .................................... ATGAGACATTGAGATTAGAGACAGAAAGTA 13532 36 100.0 30 .................................... TACCCCAAAATATAAATAAAATAAATATAA 13598 36 100.0 30 .................................... TTTCTATATCAGATTATTCATTGATGTATT 13664 36 100.0 30 .................................... GTTTTCCGTGTGAGCAAATCCTCATCCAAA 13730 36 100.0 30 .................................... TAAAAAAATAAAAGAATACAACGTTTTAAA 13796 36 100.0 29 .................................... CAAATCTTTCCCAGGTGTAACCGTAGATG 13861 36 100.0 30 .................................... TAAAAACATGGGGCGGCGGTAATAGTGTAA 13927 36 100.0 31 .................................... CTAGAAGGACTTCTTTCTAGAGAATTATTCG 13994 36 100.0 30 .................................... GATTTGGTCTTGTTCTTTTGTCCCTTTTCA 14060 36 100.0 28 .................................... ATACTCATAAGTTATTGAAAGAGAGGAA 14124 36 100.0 30 .................................... AATTTGTCATTGACATCTACCACCGCCCTG 14190 36 100.0 29 .................................... CAAAGCTAATGACACGGCTAGGGCACAGG 14255 36 100.0 30 .................................... ATAATAAAATGAGCGGTAAAACATTAACAG 14321 36 100.0 29 .................................... TGGCGCAATGGTTTTAAATCATATGCCTT 14386 36 100.0 30 .................................... GGCTTAACTCGGTTACGAATGTATCATTGT 14452 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ================================ ================== 45 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //