Array 1 9987-12151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXR01000002.1 Rothia dentocariosa strain 1234_RDEN 1_12171_300908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9987 29 100.0 32 ............................. CATAACCTGGCAGGCAGTGCCAGGCGTAACAA 10048 29 100.0 32 ............................. GGGTACCCCAACGAGGGGTTCGCTGCCGCCCA 10109 29 100.0 32 ............................. GCGCCGCAGCATGGGCAGCCATGCCAACCGGG 10170 29 100.0 32 ............................. AGATACGCTCAAAGTTCGCATTATGTGCGCTT 10231 29 96.6 32 ............................G TAGAGAGGGAAGCTAACTAATGCCTAACGCAC 10292 29 100.0 32 ............................. CGTCGCCTACCACAGTAACATGCGGCTTCAAC 10353 29 100.0 32 ............................. CACGAAGTTCCGTAGGCATATCCGGCGGGGGT 10414 29 100.0 32 ............................. TACCGAGAGCGGACGTACATACGTAGCAGAGG 10475 29 100.0 32 ............................. GTGCCAGCCGCAATAAGCGCGAATCATGGACG 10536 29 100.0 32 ............................. CCGAATATCGTCCGTTTCTGGAAGATGCTGGA 10597 29 100.0 32 ............................. CTACGGACTTATTTACACTTACGATGGTAACA 10658 29 100.0 32 ............................. TGGAAGAAGCGAAACGCGCCGGGTTGGAGAAG 10719 29 100.0 32 ............................. GTCGGTTTGCACGCCGGGGGTGCGTTCGCAAA 10780 29 100.0 32 ............................. ATCCGAGAGCTTACGCAGGTTCATTGAACGTA 10841 29 100.0 32 ............................. CGTAAACCGAGTTTTGAAGTCAACGTTATAAA 10902 29 100.0 32 ............................. TCTACCTAGCGGGCGCGCGGTGTGCTATCGAG 10963 29 100.0 32 ............................. ATATGTTCGCACCGTGATTTTTACCCCCATAC 11024 29 100.0 32 ............................. CCCAATTTGCCGCGATACCCTGTGTATCTAGC 11085 29 100.0 32 ............................. CACCCTGAGGGCGCGGGCGGTGCAGCGGATAA 11146 29 100.0 32 ............................. TGGATTGGGGGCCACATCAGCAAAACGATGGG 11207 29 100.0 32 ............................. ATGGGAATCCCAAGCCCGCACTGTCGAGCTCA 11268 29 100.0 32 ............................. AACTGTCTTGAACCGAAAAATCGGGAAGTCGC 11329 29 100.0 32 ............................. GCCGTGAGTACGCGCCCGTCCATATCACCGCC 11390 29 100.0 32 ............................. TTTACAACCTGGTAACAAACATGATGGAAGGA 11451 29 100.0 33 ............................. TAATAGCCACCTTGAGCCTCTGTACGAAAGTGT 11513 29 100.0 32 ............................. AGAGGGATGGGTGTTCGCGTCTTATGCCGCTG 11574 29 100.0 32 ............................. CCTAAAGCGGCTCTTGAAGAGCTGGAACGGTC 11635 29 100.0 32 ............................. AAAGCAGAAATGCTAAATCGCTGATTGACAAA 11696 29 100.0 32 ............................. CCACGGGGGCACCAGTCCCGACAGCACGCGGC 11757 29 100.0 32 ............................. GTTCTTCCTAAACCGTACAAACCGGTCAGGGA 11818 29 100.0 32 ............................. GCCGAAGAAATCTTGAATGCACGGATTTATCG 11879 29 96.6 32 ............................T ATTTTGTGTAGACGGGCGAAGCCACGCCCGGT 11940 29 100.0 32 ............................. TGCCGCTGCGTCATGGCACCACTCCTAAGTCA 12001 29 100.0 32 ............................. TGGATTGGCGACCACATCGGCAAGACGATGGG 12062 29 100.0 32 ............................. CAGCCCGGCGAATGGGAATACATACGCATCCC 12123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.8 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : GGGCTCTGGAACGGTCGGGGAGAGGAGCAAGAAAGCGGGTACAACTATGGAGCTGATGAGTGATGATTGTTGTCGTATTATCCGCATGCCCGGTTGGTTTACGAGGTGATCTTACGAGGTGGCTATTAGAAATTAGTGCTGGCGTTTTTGTAGGAAAAGTGAGTGCGCGTGTGCGGGAGCATCTATGGAATCGTATTACGGTTACTTGTAGTGATGGACGTGCTCTTATGGTGTACTCGGCAGATAATGAACAGCGTCTTGATTTTAAGATTCATAATTATCCATGGGAGCCTGTAGATTTTGAGGGGGTTAAACTTATGATGCGTCCGTCTACTCCAAAAAAGGGGTTGGTACCTCGAAAAGGATGGAGCAAAGCAAGTCGATATAGGCGTGCTTCACGACGCAGGTAAGAGCATATCGTGTATTCTTGGAAGTAGGTTATGGGCTTTAAACTAATACTAAAACTTGAGGTATGGGGGTAAAACCCCATGTCAGAAAGT # Right flank : TTTCGTACCACGCCGTCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19-962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXR01000056.1 Rothia dentocariosa strain 1234_RDEN 235_982_17393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 ............................. TTTTCCCCAGCACGGTAAAGCGCTACCGCCTC 80 29 100.0 32 ............................. TCTAATGCCCTGAGAACCACAGGGTGAGACGC 141 29 100.0 32 ............................. TACCCATCCGATCCCAGGGATGTACACTTCAT 202 29 100.0 32 ............................. CGTTGTTCTAGAAGCAGGGAACCGTCGTCGCC 263 29 100.0 32 ............................. GGCGGCGACTTGCTTGGGAACCTCGCACCAGC 324 29 100.0 32 ............................. GTCACCATCACCCCACCCGAAGAGGGCAAGCA 385 29 100.0 32 ............................. TCCTCAAACATCTTCAAGAAACGCTTGCGGTC 446 29 100.0 32 ............................. CAACGAGCACTGCGGCAACTCTCCACCTACAA 507 29 100.0 32 ............................. AAGACTGTACCGTCTTAGATGCATATAAAATC 568 29 100.0 32 ............................. TCGCGCAGCAGGCGACACTGGCGACACGTCCC 629 29 100.0 32 ............................. AAGCAGGGCAATCTCGTTCATGTCTGTACAGT 690 29 100.0 32 ............................. CATACCAAGACACATAGCAGACGACAGGGTGA 751 29 100.0 32 ............................. TGCCCGCACGGGCGGCGTAACCGGCCTTGACC 812 29 100.0 32 ............................. AGTATTCCGTTTCATGTGTCCGTTTCCTTTTC 873 29 100.0 32 ............................. AGCTTGAAGATACTCGCCAGCGACAGAATACG 934 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : GTCCTTACCTCGAAGTACA # Right flank : GATTACGCGCACTAACCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42308-41179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXR01000067.1 Rothia dentocariosa strain 1234_RDEN 259_68253_1800989_53+,112+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 42307 29 100.0 32 ............................. CCGCGATGAACTGATCAAGCATCTTGAGAAGA 42246 29 100.0 32 ............................. TAAAGATGCAATCATTCAGTTGCTAATTGCCA 42185 29 100.0 32 ............................. GTGCACATCGTACAGTTGATGAAACAGCTAGG 42124 29 96.6 34 ............................A CCGAAAGGGTACCTTATCGTTGTTCGCCCGCCTA 42061 29 100.0 32 ............................. TTTCTTCTTTTGGGTAGGTGCCTTGTCCTTTA 42000 29 100.0 32 ............................. TACTAGTTCAGGTTTTAATTCTTCAACGGCTT 41939 29 100.0 32 ............................. CCGATTCAGATACTTGTCGGTACCGGTACGGC 41878 29 100.0 32 ............................. CTACGGGGCGACCTCTAGGATTCGCACCGTTC 41817 29 100.0 32 ............................. TTCTGAACCTCATACGCGGTATCGGTAAGGTT 41756 29 100.0 32 ............................. GCGTAGCCTCCATTGACGTACCCAACAGCGAC 41695 29 100.0 32 ............................. AGTCGCTTGGCGCGGTTGATGCGGTCTTCAAA 41634 29 93.1 32 .....................G......G ATCAGCTGATCATCTAAATACACGTCGTATCG 41573 29 96.6 32 .....................G....... CTGCCCCTACCATCCAAAGACATTAGAGAGGC 41512 29 96.6 32 .....................G....... TGGAATCTGCCCGGTAGCGCTTCTGCCCCGCT 41451 29 100.0 32 ............................. CACTATCATTCGTAGACTACTGGGCGGCCATG 41390 29 93.1 32 ...........A.........G....... CGGTAATAAGACCGTGCATAATACCGGAAAAC 41329 29 93.1 32 ......T..............G....... CAGTTACTCACTGTCAGTAGCATCAGCAGCAG 41268 29 93.1 32 ..............C.T............ GAAATGGGTACAACTCGGATAAAAGTGTCACC 41207 29 82.8 0 .....T..T...A...A....G....... | ========== ====== ====== ====== ============================= ================================== ================== 19 29 97.1 32 GTCTGCCCCGCGTGTGCATGGATGGTTCC # Left flank : GGGGAAGAATGTTGCCCAGAAGTCCGGTCTGAACCGGGTAGTTCTGGATGCGGCATTCGGCGTGTTCCGTTATCAGCTGGAGTATAAGACTGCCTGGTATGGTTCTACGCTTGAGAAGATTGACCGTTATTTTGCTTCGTCGCAGACGTGTTCGGAGTGTGGGAGGAAAGCGAAAACCAAGCTGACTCTGCGCGACCGTGTCTTCGACTGTGCGTACTGTGGGAATATGATGGATCGTGATTTTAACGCGGCCGTCAATATTTGCCGTGAAGCGCAGAGGCTTTTTAACAAAAAACTCGCCTCAGAAAATGGGGAGAGTCTAAACGGACGTGGAAGTCGAGGCGCTCTTCAGGGTGCTGAGACTGTGGAAGCGTCAAGACCACCTACGAGTCATCGTAGAGGGTCACCGTAGATGAGTAATCATCTGCCCATCTATTGCATTATGCACGCAACTGAATAGAGTTTTGCAGACATGCGGACGTTATACCTAGTCAGCAAGC # Right flank : TGCCGTAAGCGATAGGGCTCTGGAACCGGTTTTCCTTATTCCTCCGAGATATCAATAGCCTGGAGTACCACCTGTTGAATTCCGGATAACGCCTCCAAGGAGCTATCAGCTAGGCAAGAGAGACTAGGAAACTCTGCAACGGTTCCCACAAATTCTTGGTCTTCTTCAGACCATTCGACGCGGTATGTGTATAGTTCTTCCCGAGGAATAGACATTTTATTCTGCCTCCAACTTCTTACAAAGCAGTTTTGTTTGCTTTTATATGCGTATCTGGAAGTATAGATAATTGCAGAGGGTGGAGCATACGCACGATATAGGGTAAGGTAGTAGCATACGAGTGAGCGCCCAGGTCCGCTAAAACTCTGAGGGCCCACCCTGTGAGGGCGTTATACTAGCCAGCGGCTAATAGCGTCGACTAACTTAGCGACCGCCTCGATGAATCGTGAACCTGCGTCAACAAGTCGCACGATCGTCCGGGCGGTTTCGCGTTAAAGCTGCAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGTGTGCATGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGTGTGCATGGGTGGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //