Array 1 3732-76 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHL01000037.1 Acetivibrio thermocellus strain PAL5 PAL5_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 3731 30 100.0 38 .............................. TGCTATCTAAATCAGAAACAACTATATCAACAAGCTTA 3663 30 100.0 36 .............................. CACTATTAGTATATCATATTTTTGATTAGTTGTCAT 3597 30 100.0 38 .............................. TCAACGCAACAGCTTCTGCTCTCGTTATTGGCTTATCC 3529 30 100.0 36 .............................. AAAGGCAAATTGACCATAAACGACGGAGGTTCCGGA 3463 30 100.0 37 .............................. TTGATATATCATAGAAGGCAACCTCTTATATATCTTT 3396 30 100.0 36 .............................. AACCTGACTCAATATTGATAAGATGACCTTCAATAA 3330 30 100.0 39 .............................. GCTTCCAACCTATTGTAAACGTATATATTCCAAACCAAA 3261 30 100.0 35 .............................. AATATAATTATAAGTTCAATTATAAGTTCGAAAAA 3196 30 100.0 37 .............................. TTATGACGGTCCCTAATCCATTGTTTAAGCAAACTAT 3129 30 100.0 36 .............................. TATTGTAACATATATATTTTTATTATCAACGTCAAT 3063 30 100.0 35 .............................. TCACAAGTTGCAGGTCCGCGTTGCCGTTGAGCTTG 2998 30 100.0 38 .............................. TGCCGGACACTCCCTTGGGTATGGTGGTTGCTATTCGA 2930 30 100.0 36 .............................. TCACCCACAAATAGTAAGGTGCAGGCTCTTTAAACA 2864 30 100.0 39 .............................. TTTTTTTGCTTATATATAGAACATATGTTCTTATAGAAT 2795 30 100.0 36 .............................. GGTTCCTCCAACCTTTTTATAAACTCTTGCCAACCT 2729 30 100.0 36 .............................. CTGTGCCATCGGATAGAATGAAAACTTTATATGACT 2663 30 100.0 35 .............................. GCAAGCGCCGGTATAGTTGGAATCTTTGCAAGCTG 2598 30 100.0 36 .............................. ACCTAAATTGACAAATAGGCTAACAATATCGGGATA 2532 30 100.0 40 .............................. TTTCAATTTTCGCATAGTCTTCCTCTATTGAACACTTGCC 2462 30 100.0 38 .............................. AAATGTTGGGGAGATCATCATACGGTGTCCCAGGCATT 2394 30 100.0 39 .............................. TCAGGTATCCCGTTTCCATCGCTGTCCACAAACTGTGAA 2325 30 100.0 37 .............................. GAGAAAATAAGCATCGCTTCATTGAGAATGTGGACTA 2258 30 100.0 37 .............................. ATATAGTTTCATAATCCTTTACAACACAAACTCTTGG 2191 30 100.0 36 .............................. ACTCACTGCTTGGTGCTGGCGTTTCATCTTTACCAG 2125 30 100.0 36 .............................. CTGTTTGAGCGGGCTTGAGGTACTTCTCATAAATCT 2059 30 100.0 35 .............................. TATTTGCTCATATATGACCTCTTGCAGAAGTCGCA 1994 30 100.0 37 .............................. GGGTCATCCCCTGGAAGGGAGAATTCCGCACTTCCAA 1927 30 100.0 36 .............................. CTATGTAGTGTCGTATAATGGATTAACTATAAAAGA 1861 30 100.0 36 .............................. AGGAAAAAGTTGATATAAAAATTATAAGCAAACTTT 1795 30 100.0 36 .............................. TCGTGCCACTTACTCATGACTAAAGTCGCGAGTGTG 1729 30 100.0 37 .............................. TGTGCAGCGCTAAAATAGAAAAAATTGAGGTGAATCA 1662 30 100.0 36 .............................. TGCTTTTGTGGCCGAGATCAAGGGAATCACGCCGCA 1596 30 100.0 37 .............................. ACTTTTGATTCTGCGCTGAATATGATAATCCTATTGC 1529 30 100.0 36 .............................. TTTTTCTCCGACTATTAAATTTGCAAAATGTAGGAA 1463 30 100.0 40 .............................. AAGGGCAGGTTTCCCTGCCCTATTCAATGCTTTCAACATC 1393 30 100.0 36 .............................. CAGAGTATGATTTTCTTACAATCCCTCCTTTATTGG 1327 30 100.0 40 .............................. GTCACGGCCATGGTGCCAAAATAGGACCTCTGGAATACCA 1257 30 100.0 35 .............................. CAAGGCAGGTGATAATCAATGCCTATACTCAGTGA 1192 30 100.0 40 .............................. TGTACCGCAATGTAAATATCATCCTCAATTCGCTATCATC 1122 30 100.0 38 .............................. TGATGTGACTGTTGTGGTTCTCTACTGCGGCGCCTTGA 1054 30 100.0 39 .............................. TCTCTGAATTCGCTGGAAATTCGTCCGTCGTACGAAAGC 985 30 100.0 36 .............................. CGTTGTCAGGTTTTGACGCTACACCTACTAAACCAC 919 30 100.0 41 .............................. AAATTTTGATGTTCCATACTAACAATTACCCTTGCTTTTTT 848 30 100.0 38 .............................. ATATAATTGTGACTTTTGATGGTGGAGGCGAACTGTAC 780 30 100.0 36 .............................. CAGTCAGTGCCACTGTTGAGATTAATGAAAAACTTG 714 30 100.0 40 .............................. TTGAGCAAAATAACTTGAATTGCTGTCTCCAGGCGAGGTC 644 30 100.0 36 .............................. AGTAGAATTACTAATGATACGATTACCTTTGAAAAT 578 30 100.0 43 .............................. GCAAAATGTTTGCAAAAAGAGCGGCTAACCGCTCGGGTGGGGA 505 30 100.0 40 .............................. TCTGATAATAAAAAAGTCGCATCACTTGAGGAAGGTGCGA 435 30 100.0 36 .............................. AAACTGCAAAAGATGGTGCAAGAATAGAAATCAGTA 369 30 100.0 36 .............................. TGCCGGACACTCCCTTGGGTATGGTGGTTGCTATTC 303 30 100.0 37 .............................. CGAAACAACATTTGGTGTAAATCCAAACGGCAGAGAA 236 30 100.0 35 .............................. TGCTCATGCAGGGACCACCTCACCCAGTACAGGGA 171 30 100.0 36 .............................. CAGTCACCTCTCTCACCTCCTCAAGCTCTGGATATA 105 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 55 30 100.0 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GTAAAAAACGGTGTAACACTTTTTTAATTGTTTGAATACTATGATACCGTGAAGCAAAACAAAATAGGAAAGGATGAGAGGTATGGAGGAGAATAGAGGTTTTGGCTGCTTTTATGGTAATGACATTATTTGGTTGATAATTATAATTTTGTTTATTCTGTGCTTGTGTCCGGGAATTTTCGGCGGTTTTGGCGGATGCGGCTATAAGAATTGACCGACTGCATGTACATAAGAATCTAAAGAGGGGAGGTAATTGCCTCCCCTTTTTGTTATAATAGGGATATGCGGGGAATTAACTGAGTTGATGGGAGTAATTTTATTTATAAGTTTATGGTTTGTCGATGTGGAGTAGTGTAAAAAACCCGGGAGATCGACAAAGTTTGTTGATGTCTTTTAAATGCAGGATTATGAATAGTTTGAGTGATTTTTTTTATTTTTGTTATTGATTTTTATTTTATATGTTATTAAAATAAAAAGTAGGAATTATGCAGGTTCTATGG # Right flank : CCAAGCTCCAACTATAATGATACCAAAAATTAAGACAGAGAAAACAGCCCAAATAAGTTAGAATGGAACTATGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 33149-36193 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHL01000004.1 Acetivibrio thermocellus strain PAL5 PAL5_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 33149 30 100.0 35 .............................. ATGTGCCTTTTCACAATTTCAAGAATCCAATTCAT 33214 30 100.0 39 .............................. TCTCGCTCGAATAAAATTGGTACATCATATTTTTCATGC 33283 30 100.0 36 .............................. TATCAGCTGTGATTGTAGCAATCCAATGGTTGATTG 33349 30 100.0 36 .............................. TTTGCAGCTTCGTTTTTGCAAGTTCTACTGCTGTCA 33415 30 100.0 37 .............................. TTGATATATTCGGTAGCCTTGTAAACTACCATGCAAA 33482 30 100.0 35 .............................. GCTTCTGAGCTCTCCTTCTTAGCCATTCGTTTCTG 33547 30 100.0 36 .............................. CCGATGACAATACTTGGATGTCTGACGATTGTAAGA 33613 30 100.0 37 .............................. CTTTAACATTAGACTCAAAAAAAATTGACAGAAGCAA 33680 30 100.0 39 .............................. TCTACAGTGTTTTGGAGTATCAACCATGCTGACTTCATA 33749 30 100.0 36 .............................. TGGAATGTTCATCAATTTGAACGTATTCTAATGAAA 33815 30 100.0 37 .............................. CTTGTAATACCTTGGAATATAAAAGCTATTGTATCTG 33882 30 100.0 36 .............................. CAGCATAAAATATTTACAGCATTATTTTAACGCAGA 33948 30 100.0 37 .............................. CCTGTATAACTACTATAAAATCAAGAGAGAAGTGGAA 34015 30 100.0 37 .............................. TGCGCACAACTTGATGCGGCAGCGGCTAAAGGAGGGC 34082 30 100.0 36 .............................. CATAATACAGATATCCAACAAGTCCTCCTACATAAT 34148 30 100.0 36 .............................. TCAACCTTTTTGCCGCCTTCAAGATACTGCCTTCTC 34214 30 100.0 36 .............................. AAAAATTGGTCCAGCTCTGATGGATCTCCACGGTAC 34280 30 100.0 37 .............................. TCACCCACAAATAGTAAGGTGCAGGCTCTTCAAACAG 34347 30 100.0 36 .............................. TTGATATATTCGGTAGCCTTGTAAACTACCATGCAA 34413 30 100.0 36 .............................. GGGTCAATAAGGCAGTATTCTTTAATGATACTGACC 34479 30 100.0 38 .............................. ATCCGGATGGTACCGTGTATGCTACAGTATTGGAGCTG 34547 30 100.0 37 .............................. GGAGTTTTTAAAAAAGATATGAAAGGAGAGCGACAGG 34614 30 100.0 39 .............................. TTTTTTATGGCATAAAAAATCCTTCAAACGCTTTAAAAC 34683 30 100.0 37 .............................. TATGCGATAGGGGAATATCACATGAAATTGTTCGTCA 34750 30 100.0 35 .............................. TCATCTTCAGCTAATTTTTTAATAAATCCAATCCA 34815 30 100.0 36 .............................. CAACTATTTCCGTTACGGCTATAGCCGCGAATATTG 34881 30 100.0 37 .............................. CCGCCTATAACAGCACGAGTGCCATGAAAAATATCAG 34948 30 100.0 36 .............................. TCTTGGAATGCCGTATTTTTCAAATCGCCCGGTCCG 35014 30 100.0 36 .............................. CGAGAGATGTATGCTTTGCGGGAAAATTGTAGTTTG 35080 30 100.0 37 .............................. TGGTGCTAGTTGCTGTAAGGCTTGATATCCTGACCGG 35147 30 100.0 40 .............................. TAAAACAAACTTCTACTGCCACTGGTCGGATTGTTCATTT 35217 30 100.0 36 .............................. ATCATTTGTTTGTTCCATAATCTGCGTTCATAGTTT 35283 30 100.0 38 .............................. AGGATTCGCAGGTGCGCAGACTACCGGTCGGCATGAAA 35351 30 100.0 40 .............................. TATGAGGGGAAGGTGATTTCTATGTCTTGGCATTATTCTA 35421 30 100.0 39 .............................. TTCCCTGTCCACTCTTGAATTTTTCTCATTCTTGAATTT 35490 30 100.0 37 .............................. ACCTCCGATGTGATTAGACAACCACGTTCTATTGTAA 35557 30 100.0 37 .............................. TTTCAATTTGAGGAGGACGATATATGAGCGAAATAGC 35624 30 100.0 38 .............................. AGGGGGTTGTGCCAGCAGAGGGGCGAGATACTCCTCCA 35692 30 100.0 36 .............................. TTGGCCAACTCCGGCCTTGCTGTCCTTAGTTCATAT 35758 30 100.0 38 .............................. TACTAATAATTATATCGCTAAGTCAATAGGTTTATTCA 35826 30 100.0 34 .............................. CGGCCTCGCAGTATTCGCCGGTGTCGCATACATA 35890 30 100.0 39 .............................. GCGAATGAAAGCCAGTTGAAACATCGAAATTGTTTAAAG 35959 30 100.0 39 .............................. AAATCCCCGTTTGCAAAAAGATCGTGAGGTTGATTTATC 36028 30 100.0 39 .............................. ATGGCTAACAATGTTTGTGTTGCTGGACAATTATTATTG 36097 30 100.0 37 .............................. GTGAATTCCGATGCTGTTTCCCTTTCGGGTAAGTTTT 36164 30 93.3 0 ...........G.............A.... | ========== ====== ====== ====== ============================== ======================================== ================== 46 30 99.9 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CCCCTTTGCAAAAGTTGGAGCCGCTTGTGTGTAAGTTTTGGGCATTGAAAGAAATGTGACAGACAGGATGAGGATAAAGATAACAGTAAGTTTTGTAATTTTCGATAACATAGAGCCCCCCTATATTTACATCTTTTGATTTTTGGATTATCATATGTACAAATTTATTGTATCATAAATTGGAGGTTCTATAAATTGTATGTAATATAAACAAAAGAAATAATTATTTGATTGTGTGACTGTATTTAGATGCTGTTGGCTCATAAGTTCCTATTGATATCAAGTATTCAAACTTTCTGCCTGGAGATTTTGCTGTTGTACATGGTTTTTATGTTCGTCGATGTGGAGTAGTGCAAAAAAGCCGGGGGATCGACAAAATTTATTAATGTGCCTCAAATGCTGATTTATAGGTCTCTTGAGAGAGTTTTTTTGTTCTGATTGTTGATTTTTGTTTTATATAGAGTTAAAATATAAAGCAGAAGTTTAGCGAGTTCTATGGG # Right flank : CACAATAGATACCGTCCCCGTGCTAATTTCATCATAGTTTTGTTGTGCCTATAATATAAATTGAAATTAATGCAAATATTGACATATCCTATAACTATTTATTTTTTCATGCCTATAAACTAAATCAATAACATTATAGGTACTCCGAAAAAAAATCTATTGACTTTTTGATATCCCAATGTTATCCTCACATTAGCCCAAAAAATCTTTGAAAGAAGGTGCTCCAACATTTACGCTCTTTTTATAGTGTTAAACGAAGTTGATTATCTTGATGATATTCTGGCCAAATTTGTTGACGTGGGAGTAAGCGGTGCAACAATTTTGCACAGCCAGGGAATGGCAAGCGCCATCGTCAACAGTGAAAATAACAAAATCTCACTCTTTAGCGCTTTAAAAAGCATTATAGAAAATATTCGTCCATATAACAAAACCATCTTTACAGTTTTGGAAAGCGAAGAATTGGTGGAAAAAGCCGTATCCGCCGTTCAAAGTGTGATAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 97811-97379 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHL01000062.1 Acetivibrio thermocellus strain PAL5 PAL5_contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 97810 30 100.0 37 .............................. CCGGGGTGCGAATGAACACACGGGCGACCGAGATGGA 97743 30 100.0 36 .............................. TACTCCGTGAATACTAATCCAGAGTAAAATGAGTAA 97677 30 100.0 37 .............................. TTCTAGATGAAGAAGTATACAACAATGCTGATTTAGA 97610 30 100.0 38 .............................. CAGACCTGTCTTTTTTGAGTAAATCTGTTTTACTGGCC 97542 30 100.0 36 .............................. GATGGTGCGGATTTGAAGGATGTGCCGTTCAAATAC 97476 30 96.7 38 ..............A............... TAAATTTTCAGGCAACTGTTTTCAAAAGCTTTGATAAA 97408 30 83.3 0 C.........C.T......C.....A.... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 97.1 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : GGTGGAATTGTCTTAAACGACAAGGGGCGAAAGCAGTTTGTAGCGCAAATGCTTGAGAAGTTAAATGCAACTTTAATGTATAAGCCCTTGGGGAGAGAAGTATCTTACAGGAGACTTATCAGGTTGGAATTGTATAAGCTTGAGAAACATCTTATGGGAGAGCAGGAATATAAACCATACGTTGCTTCATGGTAAGGAGGATGTTTAAATGTTTGTGATTATGGTTTATGATGCAGGAGAGAGAAGAAACAGTAAGGTTTTAAAGGTGGGAAGAAAGTACCTTCATTGGGTTCAAAATTCTGTATTTGAGGGTGAGTTGACGGAAGCAAACTATCATAAGCTTAAGGAAGAGGTAAGACGCAAAGTAGACAACGAAGAGGATTCAGTTATATTTTACAAATTCAGAACGATGAAGTATACTGAAAGAGAGGTTATTGGAAAGAATGTTGATCCCAATAATTTTATCCTATGAATTTGTCGATGTTGTGTATATATCCGCT # Right flank : CGTTTATTCTTTCCCTCTTCGTCAACTTTCAATATCCGTGTTTTTTTTACCCGTTAAGGATTGAACCTTTTGTTATCGTATAACATATAATCTTAAAATTTTCTCAAATGGCAATAGTAACCTCGCATGTATTAATAAATATACATTGCAATAATTAGCATTTTGGCATCGACATATTATCACGTATTTAATAATATGTAAGACGAAATTTACTTAAATTATGGGAACTTCCAGAGGTGAAATACATTTGCTGTTGAGGTCGGTTAAAACTCAGTTTAGATTAATGGTCAACAAACGTAATTTTTGGGTTGCCATCTTCCTGGGACTGTTTTACTGTATAATAAGTTATGCCCATTCGCTATATATTTATCGGGGATATGATGTTTCGGGAACTCTTAATGCAGCGTCGCTTTTTATTGGAAACGCCGATACGGCGCTTTTTGAAAAGTATTTTCTAATTTATGTTTCCGTTTGTGGTGATTTTACCATTTTCATTTTCT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2345-100 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHL01000094.1 Acetivibrio thermocellus strain PAL5 PAL5_contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 2344 30 100.0 39 .............................. TTGAAAACATTGTACAGGCAATCGCGCGTGACTGTCTAG 2275 30 100.0 37 .............................. CATAACCGACAAGTCCACCTATATAGCTATCATTTGG 2208 30 100.0 36 .............................. TTGCCGGCACTGTCGGTAAGATCCCATTCTGCCGGA 2142 30 100.0 37 .............................. ATTGTTCCACCAATAATCACACCTTCACCGTTTGCAT 2075 30 100.0 38 .............................. TCTCTGAATTCGCTGGAAATTCGTCCGTCGTACGAAAG 2007 30 100.0 36 .............................. ATGTTTCATGTTCTTCTCCGCTTCCAGCTTCATACC 1941 30 100.0 38 .............................. TTGCAAGAGTAGCGAATGTGCTAGAAGGGGCTTGGAAT 1873 30 100.0 37 .............................. AAAATATATTTACAAATGTGCCGGGATACTTTCGCGA 1806 30 100.0 39 .............................. ACGAATTTCTTGCAGGGAGTTCGCTAACAGGACTTGAAA 1737 30 100.0 36 .............................. ACTCCTGCATAAGATGCGGGAATGCTTCTTGAAAGC 1671 30 100.0 37 .............................. TGCAGTACTTAATCACCTTAAAGCAGGAGGTTAATTG 1604 30 100.0 37 .............................. CAAAATCAGCACTCAAGATGGGCAGTGACTTGGTGGA 1537 30 100.0 38 .............................. ATGTTTCATGTTCTTCTCCGCTTCCAGCTTCATACCTC 1469 30 100.0 35 .............................. CAAACGCTTGCACCTTCAATATATTGCTTTTTCTG 1404 30 100.0 36 .............................. TAAAAATTATCGTCAATAGACGCCTCATATTCGTAG 1338 30 100.0 37 .............................. TGAAATGGCTTGCGTCACAGCAGCGCGACGGCATAAG 1271 30 100.0 36 .............................. TCTAATTCTTCTATTTTTAAGTCATATTGCCGCTTA 1205 30 100.0 39 .............................. TTCACCACCTTTTTACTTGTTTACTTGGTGGCCATCAAG 1136 30 100.0 36 .............................. GCAAGCGCCGGTATAGTTGGAATCTTTGCAAGCTGG 1070 30 100.0 36 .............................. TGGTGCTAGTTGCTGTAAGGCTTGATATCCTGACCG 1004 30 100.0 36 .............................. TCACCTGATGAAGCATACACTAAGCTCAAGTCTATA 938 30 100.0 39 .............................. TCGCATCATCCATGACATCCGACAGTTTCTTGATGCCTG 869 30 100.0 37 .............................. TTGGAGAAAAAAACGTGAAGGCTATTGAAGCTTTGGA 802 30 100.0 38 .............................. TGTAGCCCTCGCTCCTGCAAATCTCGTCGGATATGTTG 734 30 100.0 40 .............................. CTATATATAGCAACTCTTTTTTACGCTTTTGCCATTCTTC 664 30 100.0 36 .............................. CTGTGAATAACAGAAAAAGCAATATATTGAAGGTGC 598 30 100.0 39 .............................. GTCGTGGGAACTAGAAAATGTCAGATACTTCTCTTTCTT 529 30 100.0 37 .............................. AAACATTTAAAGGCGGTGTAATAGTTCTTTTATAATC 462 30 100.0 36 .............................. TACCACCGTCGCTTACATAACCGACAAGTCCACCTA 396 30 100.0 37 .............................. TCTTTCAAGTAGTTTTGAGCAGCAGTCTCGAAATCGA 329 30 96.7 39 .............................C TCCCAAGTATCTGTATCTAACTGATATCCTGCAGGACCT 260 30 90.0 100 ..G................A........T. AAGTATCATCTATATAATCAAATCTATTATAACCAGTTTTTATCCTAGATGTAACAAAATGAGACTTAATAACTATGATGCCTTTAGCAATTTCACTTCT A [235] 129 30 76.7 0 ....C.G.T.C..T.G...T.......... | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 33 30 98.9 39 GTTTGTATCGTACCTATGAGGAATTGAAAT # Left flank : GTAAAGTGGAGAACTTCTCCGACACCATCGGACGAACAAAGGACAGCAGAATCAGGGAACAGCTTGAAAAGAAGCTATCCCAGGCCTTTGATGATAAAGAAAGCTTAGAGAGCGAGAATAAGAAATTTGAACGGGAAATAACGGAATTACGGCAACAAAAGGCCGGGCTGGAAAAAAACATTGAACAGGCTAAAGAAATATATCAGTTATTAAATTCCGCCCAAGGTGAGACAGAGAGAATTGAACTACGCTTGCGCTTGCGCCAGCAGATTCAGAAATCTATTGAATGGATTAAAATTTATCCGCTTCAGGAACCTTATCAGGAAATACAGGAAACCGAAGAACCCGGCATTGTTAAGATTATGAAAAGCAAATATATTGACAAGGTGCGAATTAAGTTTCGGGGAAGCCGAGACCTCCGGGTGCTATACCTAAAGAACCATGCAGAACTGAGCGAATAGCATAAAACCGTTTATAATATTATGCCATGTTATCACCCT # Right flank : TAGGCAGTATATAATGATACCAAAAATTAAGACAGACAAAACAGCCCAAATAAGTTAGAATGGAACTATGGAAAAGAGAAAACATTTTACACCTGAACAA # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 97-1257 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHL01000105.1 Acetivibrio thermocellus strain PAL5 PAL5_contig_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 97 30 100.0 36 .............................. TAATCATAAAGGACATTCTAATTTTTCCAACTGTGG 163 30 100.0 36 .............................. TATTCAAAAAACCGGACGTCGCAAGGTTCTATGATT 229 30 100.0 37 .............................. TCAAAATATAAAATGGGTAATGTATCATACCAGACTC 296 30 100.0 36 .............................. TACAAATTCTCGTTTTCCCATTTGTAGCTATACAAG 362 30 100.0 36 .............................. AAAAAATTCTTCAATTCTTCATTGTTATGTTTTTTA 428 30 100.0 38 .............................. CCGGTAATTGGTTTGTTATTTTTGACCTAATGTCTATC 496 30 100.0 36 .............................. ATGGCTGTACCAATGAAATTCTATAAGTCAGCTAAA 562 30 100.0 37 .............................. GCCTTCAAGCCGCCTTTGAAAACGATTTTGTTTTGCA 629 30 100.0 36 .............................. CTTCTTTTTCTACATCTCTTGGCATAAGATAAGGCC 695 30 100.0 38 .............................. TTAATTATAGTATAACTTTTTTGTCACATTTTGTCAAG 763 30 100.0 37 .............................. TACACTATCGCCAGCAATTCAACCGTTTTATCCTCAA 830 30 100.0 36 .............................. ATATCGTTTTGTAATATGATTCTCCAAGCGTGTCGG 896 30 100.0 37 .............................. TTGACATTGAAGAAATTTGCAGAAGTATGATTGAGGA 963 30 100.0 36 .............................. TCACTCGCGTATTTAAAATCTTCCGTCAATTTTATC 1029 30 100.0 36 .............................. CCATTTTGACCACTCCCGTTCTTGTTTGACCACTCC 1095 30 96.7 37 .............................T TATCTATATTCAACATCTGTTCCACTATAAAACTCAA 1162 30 96.7 36 .............................T TATTGTTTGCTGCGCTGTCTATGGCATTCTTTAATT 1228 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.5 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : CACAGTTGTAAAGATTATACAAAATTAAGAAAGGAGAGCTAACTTAGAAAAGCTAAAAAACTGTCTTGACAATGGGGAGCATTATAAACAACCCTTG # Right flank : TTTCTGGCTACTCCAAGTTCCTAATGTTATATATGGTTTTATAGTATAAAGCCTTAAGCGAAAATGAATAGGACTGTATAATAAGGTTAAGGCTTTATATTCGCCTGAAGCGTAAAAACGCAATAGGAAGAATAAAATTTTTGCCGGGGATAGGCCAGCCTTGCAAACTGGCTGACAAGCGAAGTCTCCCCGCTTCCCCGGCAACAATTTCAAATAGGGAGACAGAAAGGGAGACGAAATATGGAATCTATGAAAGGGAAAGTCATTCGGGACATTAGGAACCAGGAAGCAAAAAGAAAGCAACTCCAAAAGGAGATCTTCAACCAGCGGTACAATGCTACGAAAGAGGCGAAGTTCATAGACAAGGAGGATATAAATATGAATAGCTTCCGGGCTATTCCTAAAAGCGTGATACAAGAGCTAGGCTTATCGAAAGCGGCCCTGGCTATCTATCCTGTCTTATGTGCAAAAGCAGATTTTGAAAAAAATAACTCTTTTCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 112100-121600 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHL01000003.1 Acetivibrio thermocellus strain PAL5 PAL5_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 112100 37 100.0 36 ..................................... ACGAGAACCACGTTTGAATCTCGTCAATGACAACGG 112173 37 100.0 36 ..................................... AAAACTTAGGTCGTAGCATAGGTCAATGGATTTCAG 112246 37 100.0 36 ..................................... TTATTCAAAGGAGGTTGTATGTATGAAAAAAACAAT 112319 37 100.0 37 ..................................... ATGATTATATTGAGATATCTGAGATTGATGAAAATAC 112393 37 100.0 36 ..................................... CTTCTGGAAGCAGGTAGGCAATATCCCTGTGCCATC 112466 37 100.0 38 ..................................... ATCGTTTGTAGTCCCTGCTGCGGTAGATTCCGTATACC 112541 37 100.0 34 ..................................... ACATAGTTGGGATCGTACTCGTAGACGCGGCCGC 112612 37 100.0 36 ..................................... TCAAAAACGGCAATGTGGTGAGATTTAAGTATAACG 112685 37 100.0 40 ..................................... TCATATTGTCTTCTCTCCCAAATCTCTTTTTTCTTTTGTT 112762 37 100.0 36 ..................................... CTAGATGAATAATACACGCAAATGCCGTAACCGTTG 112835 37 100.0 35 ..................................... ATATGAATAAAAAAGAACAAAAAATGAGGAAAGAA 112907 37 100.0 37 ..................................... TTGGATATGGTTGAATCCATGGTCCTCGATCATTCGG 112981 37 100.0 37 ..................................... ACCTATTTTTCGCCGATACAGCTGTGGGGGAATTTCT 113055 37 100.0 35 ..................................... TTAATTTCGGCTTTCAAGGCAGCCTCTTTTTTCTC 113127 37 100.0 37 ..................................... ATAATTCGGATTAGTCAGATAGAGATACGAATACTGA 113201 37 100.0 36 ..................................... CTGTCCATCCTGCCGTAGATGTTCCTATGACGAAAC 113274 37 100.0 36 ..................................... ACTGTTTATATATTATATTGCCTACATCTTCATTAT 113347 37 100.0 35 ..................................... TCGATTTGACCGGCGTTGACCTTTCAGCCGTCTTG 113419 37 100.0 37 ..................................... GTTTTTTGCATATAATAAATGTGAAACGAAAATATGT 113493 37 100.0 35 ..................................... GCGTAGTCAATAGTATAATCTACATCACGCTCACA 113565 37 100.0 38 ..................................... AAAGTGCATTAATATGGTTTATTAGTCTTGTTCCTGCG 113640 37 100.0 36 ..................................... CTTACGGAGCCAATTGAAAACCTAGGACGTAGTATG 113713 37 100.0 35 ..................................... CCGATGACTTTCCTTGGTTGTCTGACTATAGTCAG 113785 37 100.0 38 ..................................... ATTCATCTCCTTAGCTGTCTTCTTTCCCCTTAAGTACG 113860 37 100.0 36 ..................................... ATTGTAATTGTCTTAGGTTCCTCCAACCTTTTTATA 113933 37 100.0 36 ..................................... GATTTCGTCTATTACAACCGCAGTACCATAAATGCC 114006 37 100.0 37 ..................................... ATCCTTAATTTTATTCGAGTTATTCTTTGGGTTCCAT 114080 37 100.0 36 ..................................... TATTATTGGACCATTAATTTTGAGTTTTATGTTAAA 114153 37 100.0 37 ..................................... ACATCTCCTCAACCTTTTTGTATGTATCAAAACTCTC 114227 37 97.3 36 .......A............................. AACCTTATGATTGTAATAATGAAGTTCTTGAAGACC 114300 37 100.0 35 ..................................... CGGATATGTTAATGTTCTAGATGAGGTCCAAAATT 114372 37 100.0 38 ..................................... TTGTTGACAAGGAAATTTTGCACCTCAGCAGAAACATA 114447 37 97.3 37 .......A............................. TTCTTTCGGAGCAAGCAGAAAGCTCACTGGTAACATC 114521 37 100.0 37 ..................................... TTTCAGAACTGCGTAACCAGCGTGACGAGTTCGCAAA 114595 37 100.0 38 ..................................... ACCTATACCCCTTCATCCTTAAATATAAAAAATGAATT 114670 37 100.0 36 ..................................... TTATATACTTAGCACATGCATCTTTATCTCGTATCG 114743 37 97.3 36 C.................................... ATCATTCCTCCTTTCTAAACTCCACCGAAGAGTATT 114816 37 100.0 36 ..................................... GCCTTGATGATATTAAGCCTGTGTCCGGATATCCCC 114889 37 100.0 35 ..................................... TTGTATAATAAACGTGGTATTTTTGGCCATGAATT 114961 37 97.3 35 .A................................... TAAACAATATTAGGCAATCTCTTATAAAGCTTAAT 115033 37 100.0 37 ..................................... ATCACCTCTCTTAGCCACATGATGTTAACCTCCTACT 115107 37 100.0 35 ..................................... CGAACAATTGAGCATTAGTCTATGCCCAGACACTT 115179 37 97.3 35 .......A............................. AAGTATATTATCCTGATACGGAGTCCGGGCAATAC 115251 37 100.0 37 ..................................... TCCCATATGCTATTTAGCCAGACAGGAACTTCTTCAT 115325 37 100.0 37 ..................................... AATTCACCGTAGACGAGGCGATTACCGAGGGTGACGA 115399 37 100.0 37 ..................................... ATTTTCCATCTCCCCTACCTTCTACGACTACAAGTTC 115473 37 100.0 36 ..................................... TCCAAAACGGAGCTTACAACCGGAGAATTCAACACG 115546 37 100.0 35 ..................................... AAGAATACCAGAGTAAATATAAGGGAATTGAATGG 115618 37 100.0 37 ..................................... CAAAAGAAATGCAAGAAAAAAGAGTATCGGAGGAAGA 115692 37 100.0 35 ..................................... ATGTCTGATGAAGAAGTTCCTGTCTGGCTAAATAG 115764 37 100.0 37 ..................................... CTTTTGTTTCAGCTTTCATCATTGCGTTTGCTAGAGC 115838 37 100.0 36 ..................................... ATGGGACTCATGGGCTGCTTGTCTATGGGAGGACAT 115911 37 94.6 35 .A....T.............................. CTACTCAATGCCCCGTTTTCAGTTTTCCCTGACTT 115983 37 100.0 36 ..................................... TTAAATACATTAATTGTTTCTTCTACATCTGCTTAT 116056 37 100.0 36 ..................................... CTCAAATGGAAAGAGAAACGATTGCAGAACGAGTTA 116129 37 100.0 37 ..................................... GATAGTGCAAACATAGATGAAGCCTCCGTAGGGCTTG 116203 37 100.0 37 ..................................... CCTTATCTTTATCGGTAATTGGCACGTCTATTGTTTC 116277 37 100.0 36 ..................................... ATAAGATGATGGAAGAAATGGATGAAGCATCTGTTC 116350 37 100.0 36 ..................................... CTGTCATCAACCTACGAGTCCAGCCGCCCGCATCCA 116423 37 100.0 36 ..................................... ATAAAATGATGGAAGAAATGGATGAAGCATCTGTTC 116496 37 100.0 36 ..................................... ACGTATCAATGCTTGTTGCATCGTTCTGCCTGGTAC 116569 37 100.0 38 ..................................... ATAAGATGATGGAAGAAATGGATGAAGCATCTGTTCCT 116644 37 100.0 37 ..................................... TAGTGGTACTGATGTTGACTATAGATACAAAAGAGGA 116718 37 100.0 36 ..................................... TTCATTATTAAGGCTAAAATTGGTGGCGTAAAAATG 116791 37 100.0 38 ..................................... TTCACTGTTTTGCTCCCAGAACTCCTTTATGGCGTTAT 116866 37 100.0 37 ..................................... AACAATTCATGGAGGCACAAAGCCATACCGCTGATGC 116940 37 100.0 35 ..................................... ATGACTCCCTTACCACAGTTGTAGGTAAAGAAGCA 117012 37 100.0 34 ..................................... CGAATTGGTTTAGCAACACGCCCAAAAACTTGAG 117083 37 100.0 36 ..................................... ACATTAGATGAAAAAAAGATTAAAAGAGAGGATATA 117156 37 100.0 37 ..................................... CCCTTGTAGCTTTATTTTTTCTTCATCTTCTATACTG 117230 37 97.3 39 ..A.................................. AAAATTGTTGATTTCACAATGTTTTCTGATTATATGCCA 117306 37 100.0 38 ..................................... ACGTTTTAGGGGTGGATGAAGCACAAAACGACCTTTGG 117381 37 100.0 37 ..................................... ATCATAACAGGAGGTATAGAAAAGTTATGAAAAAATA 117455 37 97.3 37 ..G.................................. ATGACAATAAAAATTATTCAACATACAAAAACCAATT 117529 37 100.0 38 ..................................... TAGTTTCTTCAATTAATTTTTTAAGCGTTCTATATGTA 117604 37 100.0 36 ..................................... ATTGCTGTTTTTGATAATCAGCCAACAATGCTTCAA 117677 37 100.0 36 ..................................... TTAAGTCATATAAGCCTTATTTTGATGACACTGGAG 117750 37 100.0 35 ..................................... GTTATACTCTTGCTCAATTATATAGATTACAAATG 117822 37 100.0 39 ..................................... CCTGCTCTCCACCTATGTACTATTTCCGGAAGTTCCTCT 117898 37 97.3 35 A.................................... CAGTATTGCATTGTTATTCCTCGCTTTCCATTTTT 117970 37 100.0 35 ..................................... GCCTGTTATAGGCTCAATTATAGCTTTTCAAATTA 118042 37 100.0 36 ..................................... GTTATTCCGCGAAAGTATATCCCATCTTTCTCACTT 118115 37 100.0 35 ..................................... AAGAAATCGCACTAGAAGATATACCTAGTGATGTT 118187 37 100.0 36 ..................................... TGTTTGAAGATGTAACACAATTGAGTGATAGAATCT 118260 37 100.0 37 ..................................... GGCATAGCCACAGGGACATACCAAAAAAATGGTATGT 118334 37 100.0 37 ..................................... TATTTAGCTTATTGTTTGTTTTTGTAGTTACAATTAA 118408 37 100.0 39 ..................................... TTACATCTAAGTATATTACTTTTGAATTCTTCGCATTAG 118484 37 100.0 37 ..................................... GCTTCCATCCAGGGCAGTATGAAACTCGTAACCTATT 118558 37 97.3 37 .......A............................. ATGATATGGCAAGCGGTGCCGAGCAAGCATCTCAAAG 118632 37 100.0 34 ..................................... CTGATGAACTTGTTTTGGCCGGCCTGGCTCAAAA 118703 37 100.0 35 ..................................... ACTAACGAGATGATGAATTATATTGATGTGTACGT 118775 37 100.0 36 ..................................... TATTTTGTTTCCGTATAGCATAGCCAATTGCGGCAG 118848 37 100.0 37 ..................................... ATATTTATAAGGGCCTGGATCGAACGGCTGATAATGG 118922 37 100.0 39 ..................................... CTGGGACTTCAAATCCCAGCATATCCGAGAGTACAGCTG 118998 37 100.0 36 ..................................... ACTTCTGTTCCACTTTTGATAATGAAAACTTTCATA 119071 37 100.0 37 ..................................... ATTCTGCTGTTGCGCTGAAAGCCAAAGAACTGGCTGA 119145 37 100.0 37 ..................................... GCTTTATGCTTCCTGTATGCTGTTATATCCTCAATAC 119219 37 97.3 36 A.................................... CTGTTTTAATGTATTTCATAAAACTTCCCTCCATTT 119292 37 100.0 35 ..................................... CCACGACACAACGGAGGGGGCATCCCCTCCAACTA 119364 37 100.0 38 ..................................... CTTTCATTGAAACTCTGAATGGTTTCCGGAAAACTCTC 119439 37 100.0 37 ..................................... AATAACGTGAGGTTGAGCATAGAACAAGCAAAGAAAT 119513 37 100.0 36 ..................................... TCAAAATGACTTGTTGGGACTGCGTATTTAATCAGA 119586 37 100.0 36 ..................................... AAAAACATAACTATGTTTGCGAAGACCGTCAAAGGC 119659 37 100.0 36 ..................................... ATGGCAATAGATTGGTTAAAACCTATCAAATTTGAA 119732 37 100.0 37 ..................................... ATATTTGATGAGGTACACGAATACGAGACATGGGATA 119806 37 100.0 36 ..................................... CTGAAGAAACAATTATATTTGGAGACAACCCTACTA 119879 37 100.0 36 ..................................... CCAATGTCGGCACCTGATTGTGACGCTGCATATTTA 119952 37 97.3 36 ......A.............................. ATTTTATATTATTATTGTATAAAAACATATGTTCGG 120025 37 100.0 36 ..................................... TCTTAGGATTACGCTGTGTTTTAAAATTGAATATTA 120098 37 100.0 37 ..................................... ACCTCGGGGATTCTCCGACGTCTCCCTAGCCCTATTC 120172 37 94.6 36 .A.....A............................. TACATAATGATGTCTTTATATTCCACATATCGCATT 120245 37 100.0 36 ..................................... AAGAAACCGAAGAAGATTATTCGCTTGTTGCCGAAG 120318 37 100.0 38 ..................................... ATAAATTGAAAAGGAGGACAAGCATGTCAAACAAAATC 120393 37 100.0 35 ..................................... TCATATTGCAACTTGGCTATCTGCTCACTCCGTCG 120465 37 100.0 36 ..................................... TCTTTGCTGCCAAAGCGGCAGAAAGACAAAAACCCA 120538 37 100.0 36 ..................................... CTGCTGTCTGGTCCAGTATGCTGCTACACGATTACC 120611 37 100.0 37 ..................................... ATGTATTTGTCATACCATTCTTCATATGTCATATCTG 120685 37 100.0 35 ..................................... TAGCGAGACCAAAGAATCCGTTCGTTGTGAATCGT 120757 37 100.0 37 ..................................... ATTCCGCCCTTAATCGTGTTCTTCATGGTATTACCCA 120831 37 100.0 37 ..................................... CTGGTATAACAATAGTCCAACAGTGCTGACAAGCAGG 120905 37 100.0 37 ..................................... GGCATATCCATTTTCCAACGAATAGTCACCCACAATC 120979 37 100.0 38 ..................................... ATTGCAGCTCTTTTAATTGAGCCTCATATTTTTCTTTG 121054 37 100.0 36 ..................................... ACGAATTTTGCATGTCGTAATCGCACGCTTCTAGCA 121127 37 100.0 35 ..................................... TCATTTTTGTTGTAGCACCTACGCTTCATGGCGAG 121199 37 100.0 36 ..................................... ACGAGAACGGGAAAGCAATATTGAGAAAGCCCTTTG 121272 37 97.3 35 .A................................... CTCAATCACAATATAGTACTATCAAAAACAACATA 121344 37 100.0 35 ..................................... ATTTAAAGGGCGGGTACTTATACCCGCCCTGACCT 121416 37 100.0 37 ..................................... GAATGATTGAATCAATAACCATTATTGCCTGCAATTA 121490 35 94.6 39 ...................--................ CATACTTCTATCAGTTTGTCGCGTTCTTCTCTTTCCAAT 121564 37 78.4 0 ......A.....T...........TGG.A...C...T | ========== ====== ====== ====== ===================================== ======================================== ================== 130 37 99.5 36 GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : AAGTAGCTTGAAATGAGTAAAAAAGTCTCATCAAAAAATGCTTGTAAACCTTGAAAATAGCAGGATTTTCCTGCTATTTTCTGTCTTATTATGCTTTTGGATTGAAACAACGACTTCTGTTAAATTTGGAAATTAAACTCTACTTTTCTTAAATGAAATATAATATATAATAAAAAAGCTTAATTTATAAAACTTTAAAGAATGCTGTCAACGAAATGGAATTCCAAATTGTAATATTTGTTGAAAAGATTATTAGTTTATGATATATATAAGTTGTAAGTTGGATTGTGAGTGGAAAAATGTGGCTGCAAAATTATTGGAAAATTTGAAGTGATGGGCTTGTAAATCTTGAAAATGGCGGGTTTGAAGCCTATGTTGGTGACTGAAAAATGGGTGGAATTTGATAAAAATCGACTATTTTTTGATGAAAAATGTGCAAAAAAGTTTCGTCAAAAAAATCTTGTAGGCTTTGAAAATGGCGGGATTTGACTTCGAGGGCT # Right flank : TCTACACTTACATAAGTTTGTTATGATTGCTAATGTACGTCTAAATTTTATTTTAACTAAAGTATTAAACCTAAATTTCAACAAAAATTAAAAATCAAAATAAAATTTACACAAAATTGTTAAATTCTTTAGCGAATATATAATATAAAAATGCATTTAACAAAACCAGTCTTTAAGAAGATGCAAAGTCCAATCATACTACAAAACAGAACAGAATAAAAATTGCCGTAAAACAATAAGTTTTGTCGAAAAAAGTTACATTAATTGACATGGCTTGCTATATGATGTACAATAATGCTGTAAATTTTTCGATTTGAAAGAAGGTGACTCCTTGCTTGCAGGTGTATTGCAGCTGGGACAGTACGCACTCAATAAAAAGAGTACTGACACCGAGGAATATCTTCAAGTCATTGAAAACCCTAATGATAAAGGCAATTACAATCATGTCTTAAAAATTGCATTTGAATCTACCGAAGGAAACATAGTCTATCGTGGGGTTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 139230-141836 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHL01000003.1 Acetivibrio thermocellus strain PAL5 PAL5_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 139230 37 100.0 37 ..................................... AGAAACGTGGTTCCCATGGCAAGATCCAAGCGCACAG 139304 37 100.0 37 ..................................... AAGCAGACACAGAAGGCATAACTGGATTCATGTATGG 139378 37 100.0 37 ..................................... TTTATCTATCTGTGTCATAAAATCGTGAGCCGGCTGT 139452 37 100.0 36 ..................................... ATATTTTTATTGTCTAGAAACCAATTTTGGAATTCT 139525 37 100.0 37 ..................................... ATCTTCAGTCCAATTAGGACTGTACATATGTACAAAA 139599 37 100.0 38 ..................................... TACATTATTTTATGAATTCTGTTATGCTGAAATTAAAT 139674 37 100.0 38 ..................................... CAACCTTACGGGGTATTGCCCCGTAAACGCTCCAGGCT 139749 37 100.0 38 ..................................... ATGCAGAAAGTTTGAAAGCTGAAATTGAAAGACTTCAG 139824 37 100.0 34 ..................................... CAGACGCAAAAGCACAAAATCCAGAATTTACCAA 139895 37 100.0 36 ..................................... ATATTTACGCCGGCATCCCTCAGCCGGCAGAAAAGG 139968 37 100.0 36 ..................................... GCAATATCCGGCAGAATTATTTCTAACACTCCTATA 140041 37 100.0 36 ..................................... ACAACATAGCCATATTAAACAGCCTCCCTTACTCTG 140114 37 100.0 37 ..................................... TGGGCGAGGGTTGGCCGCTTATTTATACAAACGAGGG 140188 37 100.0 38 ..................................... ACAAAACACATACTATAAATAAAATATAACTTTTATAT 140263 37 100.0 37 ..................................... TATAATATTAATTATGTAAGGAATACAGCAATAAAGC 140337 37 100.0 34 ..................................... TTATATCTAACCGTTATTATGCCGTCCCTTACAT 140408 37 100.0 35 ..................................... CACTTGTTATTTCTGTATAGGTTAATCCTTTTAGT 140480 37 100.0 37 ..................................... CTAGTTTGGCAATCTTGAATCCAAGGTTGATATACTT 140554 37 100.0 36 ..................................... ACTAATTGCCGAAATCATCTTGTGCTGTTGGTCGTT 140627 37 100.0 39 ..................................... GATATAACTGGCACTGGTACTGGCACAAGGCACTGACAC 140703 37 100.0 36 ..................................... ATTTACCCCATTGATTTTTCTCAAATTCAACGATGC 140776 37 100.0 37 ..................................... TTGAATCGTAATGGTGAACAGATGGTTGATATAGAAA 140850 37 100.0 36 ..................................... CGGTGGTTTTGCCGCCTGCTATTTTAGCAGACTTAA 140923 37 100.0 35 ..................................... TTAAACTAATCTATAATATAAATCATCTACTGTTA 140995 37 100.0 36 ..................................... TCTGATTTTGATGCTCAAACTGTATTCCCCGGCATT 141068 37 100.0 36 ..................................... CTAAAAATGGCATATATGTTAACTATAGCTTTTTAA 141141 37 100.0 36 ..................................... AAAGTGTTATAATGATAGTGCGAAAGAGTGTGAAAG 141214 37 100.0 36 ..................................... TTTATTATGTTGTGCGTAACCGCTTCTTTGGCTTTA 141287 37 100.0 35 ..................................... GCAATTATGAATGTTAACAACGTTGTGGTTTTCAT 141359 37 100.0 36 ..................................... GGCATGACATATACTTCTCGTATCCCAAATTTCCTC 141432 37 97.3 35 ..A.................................. TTCTCTCCTCCTTCTTCTGTCTCTTCAGCCTTTTC 141504 37 100.0 38 ..................................... AACATGATCTAATGAGGATCCAGTCTTGGTTTAAAGAA 141579 37 100.0 36 ..................................... GTCCCTCCTTATGCTTCAACATTGATTGCTACGCCT 141652 37 100.0 38 ..................................... AACCTTACTATGATGTTATAACATACAAAGGTTGTAAA 141727 37 97.3 36 ............T........................ CTCAAACTCAGTGATACTAAGTATTTTAAAAGAAAA 141800 37 94.6 0 ...............................AA.... | ========== ====== ====== ====== ===================================== ======================================= ================== 36 37 99.7 36 GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : CCGGTAAAGAGATTGACAGTATAAATAGATTGAGAAACAAAGTTGAGGCAAGAAATAATAGTATTTTTGCTCATGGTTATGAATTTATTAGTAAAGAAAAGTATAATGAATTTAAAAAAGTGGTTGAAGATTATATGAACTTGTTGTGTTCTATAGAAGGAATAGATAAAGAAGAACTGTTTGATTCATGCGAGTTTATAAAGCTATAGCCGAGAGTTAATATGATTAAAGAATAAGGTGTTGAAATTAAAACCAGATTATGTTATGTTTTAATTAAAGTGATAAGTAACATTTTACAAAATGTAGATACAAAATTATTGAGAATTTTGAGTTCATGTTCGTTAAAGCCTTGGAAATAGTGGTATGGAAGCTTATGTTGATAGCAAAAAATTGAATGAAAAATGCTGGATTTTAGGAGAGTTTTGATAAAATATGACCCAAAAAGTTCAGTCAAAAAAATCTTGTAAGCATTGATATTTAAGCAATATCGCCTCGAGGAC # Right flank : CATATGAGACTCTATTTCAAGCCTTACAGAATCAGAACTTCCACCAATCCATTTTCTGTGCCGTTAAAACAAACCTTGTAAGGAGGTGCCGAATGAAGCTGATTCTGAATACACCCGGACTTTACCTTTGTAAAAGGGGAGAGTGCTTTCAGATTCAAAGCGAGAATGAAAAACGGGAAATAGCTGCAACTAAAGTTGACCAAATAATGATAACCACTCATGCAGCTCTTACAACTGATGCAATTGAACTGGCTCTTGAATACAATATTGACATAATATTTTTAAAAAACACGGGACAACCAATGGGGCGTGTATGGCATTCAAAACTTGGAAGTATCAGTACAATTAGAAGAAAACAATTATTCCTCCAGGATAGCCCGCTTGGGCTTCAACTTGTAAAAGAATGGATCTTGGAGAAAATGGATAATCAAATACGGCTGTTAAAGAAACTGGAAGTTAACCGCAGAGATGATGAAAAACGTGCTATAATCAGGGATACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //