Array 1 5004940-5005906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMR010000001.1 Nocardia goodfellowii strain DSM 45516 Ga0104629_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5004940 37 100.0 34 ..................................... TCCTTCGAGCTTGTTGGCCAGCGATCCGGTCAAC 5005011 37 100.0 37 ..................................... GGCTCGTGGTCAGCTGCGAAGACTGCAGACAGGACCA 5005085 37 100.0 34 ..................................... CCCGCGAATGGCTCTTGCGAGTGCGCGAGCAGGA 5005156 37 100.0 37 ..................................... TGCTCGGTCAGCTCGTCGGTGTCGCGGTAGCTGAGGA 5005230 37 100.0 34 ..................................... TTCTCGCCCGCATCCATCATCTCGCCGCCGAATC 5005301 37 100.0 34 ..................................... ATTCCACTGTCGCCCGCGAAGCGCGGCCGGTCGC 5005372 37 100.0 35 ..................................... TCCGGATACGCCGAATTCCACCAGTCCCCGGTCAA 5005444 37 100.0 35 ..................................... CCTTGAAGCCGCGAACCAAGATCCCGCTCACCGAA 5005516 37 100.0 34 ..................................... TCGTTTGACCGGTTCCGCCTTGTCTGGAATCCAC 5005587 37 97.3 33 .....................C............... AGGCGCGCTGGTCCGCAACATCGCTTCGGTGAG 5005657 37 97.3 35 .....................C............... ACTCTCACCGCCATCGAGGACGACGCCCCGCCCGA 5005729 37 97.3 33 .....................C............... TCGGCATGCCGGGCGCCGGCGTCGTAGCCGCCG 5005799 37 100.0 34 ..................................... TGGGGCGGAGAGATGCCGACGGCGTATATCAGCA 5005870 37 94.6 0 ................C....C............... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 99.0 35 CTGGCGCCGAGCTCCCGAGCTGGGCGAGAATCTCAAC # Left flank : GGGACCTTGCCCGTTCTGCCCGAACACCAACCGTGTGCCGAGTTGCTTGTGCGGGACTCCCACTCGGTTATCGGTGCCCTCGACTCGCAGCAACCCGGTTTGCCATGCGCATGAGGCCTTGCCGGCGTCATGGAACAACCCGAGTAGGTAGGCCAGCTCGCCACAGCCGAACTCTGAAGCGAAGCGTGCAGCCCACCGTGCCGTGGAACGACAATGATCGGAAAGTCCGTGACGCGGCCCTAACGCGGTGTGGCCGTGGGCATCTACGATTCGGCGTGCGCTGTGTGCCCAAAGATCCACCGCCTCAACCTATCCTGAGCCTCTGACATCGAACCTCAACCGCGCCTGCCGGTGGGTTGGCGATCCGATAGTTAGGAACCTGTAGTGCGACCTGAATCCCAGGACCGTTCCGAAGTCGCGAGCTGGCTTTATCTTGTCCGCGACTGTCTGATACTGCGGAATCTCGGTACCCTTCATGGGGAATGCGCTGGTAATCCAGC # Right flank : CCTGTTCCTATACATCCTGGCCCAAGCATCGGATAGTCGCGTTTCGGTGCTTGGGCCAAGTGTCCCCGGCGGGTTTGTTGCGATCAAGCGGAATCTGTTGGTAGTCAATGCAATTGGAACCGACCGGTCGACCATTGTCTCGAAGGTTGCAGCCCGGTAGCGTGCGTCCGGCATCCGTGTCATAGCAACAGGAATCCGAGTGTTCGCGATGACCGAGGGTGAAGTAGCGAACTCCGAATCTGGCTGCGGAAATCGTGGGAAAGGGTTTGGCGGTTCGCGTCACGACTGTCGTTGCTTGTCCTTGTCAAGGTGTTGGTGACAGCAGCAGGGAAAGCGATAGACCGCTGGCTGTTGTGACTGGTCTTACTTGTCGGTGGGGCGGTGCATGATGCTGCGCAACAGTCGTTCGTCCCGTGGAATCACATGGGATGACTTGGAAATCAACAGATTACGAGGAAGGGGGCGGGGTGCCTGCGGTGGTGCAAGTTCAAGCGCCGGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGCCGAGCTCCCGAGCTGGGCGAGAATCTCAAC # Alternate repeat : CTGGCGCCGAGCTCCCGAGCTCGGCGAGAATCTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 5011945-5013126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMR010000001.1 Nocardia goodfellowii strain DSM 45516 Ga0104629_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 5011945 37 100.0 35 ..................................... GCCGTCCACGGTCAAGATGCGGCGGTACCGCATGG 5012017 37 100.0 36 ..................................... CTCAGCTTGGAGACGACGACCTTGAAGCGGTCGCCG 5012090 37 100.0 35 ..................................... TTCGATGAGGGAGATGGCGTAGAGCCGCCACACGT 5012162 37 100.0 35 ..................................... TGCCACTGGCCGTACTCGACCGGGTGCACCGTCAG 5012234 37 100.0 34 ..................................... AGCTCGACGCGGACCGTCGCGCGGAACAGCGGCA 5012305 37 100.0 34 ..................................... ACCACGATGCGCTCACCGCGTGCGCCGGCGGGGT 5012376 37 100.0 32 ..................................... TCGCGCCCTGCCTCCCGGACGCGCTCGCTCAG 5012445 37 97.3 34 ....................................A ACGGCCTGTTGCGCGTCGATATGCCGCTCCAGGA 5012516 37 100.0 34 ..................................... CCCAGCGTGACGATGGTGACGCAGCCGTCCTGGC 5012587 37 97.3 36 ............................G........ CTCAGCGGCCCGGACCCAAGCAGCGGCCGCCTGCTT 5012660 37 100.0 35 ..................................... GGGATCGTCGGGGATTCGAGATCAACCACTTCGCG 5012732 37 100.0 34 ..................................... GCGTTGCGCCGATACGTCACCAGGTGCGGCACAT 5012803 37 97.3 36 ............................G........ AACCTCAACCAGATCGTGTACGGCCGGCTGTTTCGT 5012876 37 94.6 35 ....................C.......G........ GCTACCTCGCGGCTCGACCGGGCCGACCTGCTCGC 5012948 37 97.3 34 ............................G........ ATTGCGGGTGCGGTCGGTGGCGGTGTGGCCGGCG 5013019 37 94.6 35 ............................G.....G.. TGGACAAGCCCCGCCCTCCACAGCGGCAGGGGATG 5013091 36 75.7 0 .....T......T.T.-.....A..A....CT...G. | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 97.3 35 GTGGCGCCGAGCCTCCGGGCTCGGCGAGAATCTCAAC # Left flank : TCCAAGCACGGATACTGGCGCGCCACCTGCGTGGTGACACCAGAACTTACATCCCCTGGACGGTGTCGTGATGGAGCTGCTCATCACCTACGATGTAGAAACCGTGGCACCTGCTGGGGCGCAACGGCTTCGACGTGTCGCCAAGATCTGCGAAGGCTACGGCCACCGCGTCCAGAAATCGGTTTTCGAAGTCACCTGCACCCCAGTGACACGACCGCGGTTGCTGGCTGAGCTTGCCCGCGTTATCGACCACGACCGCGACAGTATCCGCATCTACCCCCTCGACAGCGGATCCTTCGAAACAGCAAGCCACCTCGGCGCCTCACCGATCCCGCCACACAACACACCCCTCGTGCTGTAGTCGAACGCGGTTAGGAACCCCTAGTGCGACCGCAACTGCAGGAACGTTCCGAAGGGCCGAGCTGCGCAAATAGTGCGCCGTCTCCTGCTAACCGTTTTGGATCAACTGCCGTTCCAGACGAGTATGCAGGTAACACAGC # Right flank : CATTACCGTCACCGAACATCACCGATATCGACGAACGAGCGCCATATCAACGTCGGCGGCGGACTGATACCCGTACGACTGCGGCCGTAACCATTAGCTGCTCTAGCAGTCAATGTGGAATCGTGTCCGCTGGTGGATTGCATGTGCGTAATGGTCGATACCCCCTCCGGACACATCCAATATGCCCACGGGCGGTTGTAGCTGAACTTCGGCCACAACCGCCCGTGTTGCGTGGTCGAAGGTTGGTTTCAGGCCAAGTTGCCGATAGACCTCGAGCTTGTCGCCTATGTCGGCCTTCTCGAGGACGGTTGCCAGGCCGCCGAGCGATGCCACCAGTGCGTCAATTTCCTTGGCGTCCAGGCGACGATAGCTTTTTCGATTTGCTCTCCAGCGCGGCGATCTGCGCGACGACTGATTCACGCTGCTGCCGGACCTCGCGGATCCACCCAGTGACCAGCACAGGATCGGCTCCGGCTTCCAGGGCTGCCCGGTGGCGTCGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCGAGCCTCCGGGCTCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //