Array 1 10418-11301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBA01000063.1 Ralstonia solanacearum strain CFBP3059 Contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10418 29 96.6 32 ....................A........ AGGAGTAGGGCAATGAAAGGAATGTTCAAGAA 10479 29 96.6 32 ....................A........ GCCGCGCAGGGCCGCGACAGCCTCTCCATCGC 10540 29 100.0 32 ............................. TTCACGCGCTGGCCTGGATAGACCAGCGCCGA 10601 29 100.0 32 ............................. CGTGCAATTAAGCGCCGCCAAGACCGACAGCA 10662 29 100.0 32 ............................. ACATAGTCGGTGCCGTTGCCTTCCTTGAAGGT 10723 29 100.0 32 ............................. CCCGGCGCGGGCGAGACGCCCGACGCGGTGTC 10784 29 100.0 32 ............................. CCGGCGCGCCCTGGTGTTTATCGCGTTCGGTC 10845 29 100.0 32 ............................. TTGCGTATCCTCACGCGTCAGTGGATGGCTGA 10906 29 100.0 32 ............................. CACGACAGCAGACGCTGGTACACAGTGGGGTC 10967 29 100.0 32 ............................. GTTGGTTCAGCATGTTTCAGACTCCGTCGAGC 11028 29 96.6 33 .......T..................... GTCTTGCCACGCTCCAGGATGGCCCAGGCCAAG 11090 29 93.1 32 ............CA............... ACCCAGTTGTTCCGGGTAGTGTCGGTGTCGGA 11151 29 86.2 32 ...........AA.T..A........... GTTCGTCAGGTCCACAGTGACACCCCGTCACT 11212 29 93.1 32 ...........A..T.............. TTCGGGGGGCATGCAATGGCCGCCGGTGTCAC 11273 29 75.9 0 ...........TCTT........A.G.T. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 95.9 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCATCGCGAAACCGAGCGCGTGGCCATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCACTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCACGCGAGTTCAACAAGCTGTTCCCCGGCTTCGAGACCGATATCCACGGGCTGGTCGAAGAGGAGATCGACGGCAAGATGGGGTATTTTGTCGACTGCGTGCGGTAGGGTGTTGTTGCGAGCTTTTGTCCGGCGGTAGATCGGTAGATTTTTGTGTGCTGATTTTCCGCTTTTGGATCAAGGGGTTGCGTTAAGT # Right flank : GCTAACCGGCCCCAGTTCCTGGCCTGTCTGCCGGGGACCAAAGAAAGTCCGCAGATTAATGTCTTTCTAGTACCTCGATTGGTTAGTCTCTATATTTTCTGAGGCCATAAAATAAACCCGAAGTAAATACCCACGAGACTGCTACGATTCCCAGTTCGGAAGCCCGTACAGAGAGTCCAATTTCCTGGCATCAAAAACATGCATCAGGCTGACATGGGAAAAGGGGAACCACGATATTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCAGCCTGCGGGGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCACCGCTGGCTGCAGAACTCGGCTGGCCATTGCCGGCCGTCAACAAGATATTTGCGTGGTTCCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGGGCTTTTCAAAATCTGGCGCCAGGGTTATCACCCGATCTCGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20682-21931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBA01000063.1 Ralstonia solanacearum strain CFBP3059 Contig_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20682 29 100.0 32 ............................. GTAGCGCAGCAGCGAGCGCAGGCGCGCGTTTT 20743 29 100.0 32 ............................. CATCAGGGCCGGCACCACGGCAACCTGCCAGA 20804 29 100.0 32 ............................. CGAGGCAGACGATGCCGACGCCGACGCCTAAT 20865 29 100.0 32 ............................. GGCAAGCCGTTGGCACCGTCGCGACTGCGCGA 20926 29 100.0 32 ............................. CAAACGGGCGAGTACGTGGCGGACAACGCGGA 20987 29 100.0 32 ............................. GTGTGCGCACGATTGAGGCCTACAGCACCACG 21048 29 100.0 32 ............................. ATTCGGGTCGCATCGGCGTCGAGGAGGCCTGG 21109 29 100.0 32 ............................. TACAAACTGGTCGAGATCGTGGCCAGAACGCC 21170 29 100.0 32 ............................. GCGCCGAAGTAGTCCGGCTCGTCCCCGCAGTG 21231 29 100.0 32 ............................. GCTGGGGATCTTGGTTGATTCGTAGAACCCGA 21292 29 100.0 32 ............................. CGGAAGTCGAGGCAGCCAAACGCTATGCGGAC 21353 29 100.0 33 ............................. TGGACGTGGTGGCGTGGGCCAGTGAGCAGGCGG 21415 29 100.0 32 ............................. CCGGCTTTCGCCAGCTCGATGGAGATGATGCG 21476 29 100.0 32 ............................. CTGGTGGCCGACGGCACGCGCGACCTGACGGT 21537 29 100.0 32 ............................. CAACCATGCGGGTTGCGGAAGTGGTCCGGTTT 21598 29 100.0 32 ............................. CCGTTCCAGAGCCCGTATTCGTAGTGCTGATG 21659 29 100.0 32 ............................. CCTGGGAAGCGGCGATCCAGTCGAATCTGGAG 21720 29 100.0 32 ............................. TTCGCGTCGATGCGTACGACGAATGGAACGAG 21781 29 100.0 32 ............................. ATGACCGAGTTCGACTGGTACACGCCGGATGT 21842 29 100.0 32 ............................. TGACCAACGTAGACAACCGCTTCCAGACCATC 21903 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : GGCCGCATCATCCCCGCCATCGAGGAGGTGCTTGCTGCGGGTGGCATCTCGCCTCCTGAGGCTCCCCCGGAATCCGTGCCTCCCGCCATTCCCAACGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTTCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACATCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCATGAATCGGGCTATGAATTCCAGACACTGGGGGCCAACCGTCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACTATCGGTACTTTTTAGGTGGTGGAATTTTCGCTTCCTAATCAAGGGGTTGGGTTAA # Right flank : GAATTGATAATGACCAACGGCTGCGCTGACAAGCGCAGTTCTCTTGGGGAAATTATTCCAGTCCGCTAGAATGTTTCCGGCTGGCAGGAATATTTCCTGCAAAGCTGAATGGTTAGGAGGTTCTATGTTGACTGTTGGCAAAGCGGTTTCCGCGGCCGAAGTGGCGTTCATGGCCAACCTGAGCGACAAGGAAATCAACCGCATGGTCGATGAAGACGTGCTGCCATCTGCACTTGTGGTACGCGACCATGGCCGGCGTTTCGCGCCGCTGGCAGCCCCCTTTGCGACGTTCTATTTCAGGTCGAGCGAGGAACTGACGCGCGCCGCGCGGGTCCGCGTCATCGCGACGCTGACCGAACGACTGCTTGATCGTCCGGACAGGGACGCGTTTCTGTTTCTCCGTAGCCGTGTGACAAAGGCGAAGTTTGACTGGTCGGTATCATATTCGGACGTCACGGTGTTTCTGGCCACATACGTGCGGGAAGCAGCGGAGCGCGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //