Array 1 15445-16775 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFLY02000082.1 Leptospira noguchii str. 2006001870 ctg7180000005440, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 15445 37 100.0 34 ..................................... GATATAAAAAATGGATACATTTGTATAGATTGTA 15516 37 100.0 34 ..................................... TTCTATTAAACCAGAAATTGAAAACATCGAAGAA 15587 37 100.0 35 ..................................... ATGTATATAACGTTGTCGTGTAAAAAGAGAGTCTT 15659 37 100.0 34 ..................................... TTCGAAAAATCCAATTAAGACACTATGGATTAAA 15730 37 100.0 40 ..................................... TTGTCTTCCGGTTTCTCTTACGACGCCTCTAGGGATAAGA 15807 37 100.0 35 ..................................... CAATCGCGCGTCGACCTGTTGAGATAGGAAATATC 15879 37 100.0 35 ..................................... CGCTCAATCCAACTTATCTGAGTTTTCACAAGGAG 15951 37 100.0 39 ..................................... TGGGGTAGGGGATAAAAATGTAGCTTAAGAAAATATTAA 16027 37 100.0 35 ..................................... CAATCGCGCGTCGACCTGTTGAGATAGGAAATATC 16099 37 100.0 35 ..................................... CGCTCAATCCAACTTATCTGAGTTTTCACAAGGAG 16171 37 100.0 33 ..................................... TCGCACAGATACGCACATGATGGATTTAGTAAG 16241 37 100.0 34 ..................................... GTTAGCTGGAGTGGCAGCCAAGCTCCAAAGTTTC 16312 37 100.0 35 ..................................... TGTTTTTCGTTTAGTATTGCCTCTTGTCTCTCTAG 16384 37 100.0 33 ..................................... TTTTAGTCCAAGGATATCTTTGTTATAGGTATC 16454 37 100.0 36 ..................................... TGTGTACACGTTAATGTAACCGACTTCCAGACGCCC 16527 36 97.3 34 .......................-............. AAACCTTAAAAGGTCGTTTATCAGACTTTTCTCA 16597 36 83.8 34 ....-AA......CT.......A.............. ATACAGCATAGCTGATATTCTTTTGCATAAGTTT G [16618] 16668 37 100.0 34 ..................................... GCCCTGACATGAGAGCTGCTGCTGAATGGGAAAC 16739 36 86.5 0 ......................-.........T.CGT | C [16770] ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 98.3 35 GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAAC # Left flank : CCTACAATTTTAAAATTCGTTCGTAAAATCATGATTTAAGGGAGTTCCCATATCATTTTACAGACAAACCTAAGTTTTGTACGGCGTTCCCACACCTGAATGGACAGTTTCAATTATTATAAAATTCTATTTTTTAATTTGTGGTAGTTCCCACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCTAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACTCTTTAAATCCTGCTATAAGTTTTCTTTTGAGTAGCCGATCCTTTACAATGAAATACTTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGTTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCAACCCTATTAAGCCGCT # Right flank : TGCAACCGGTTGTCGGGTTCCACGTAAGTCAGGTTCCTTCTTCTTGTTAGAGGAAGCAGACTAAAACTGAACGCGGATTTATATAACGTGAGTTCAGTGCAAAGAATTCATTTTTTTGAAAAAAGCTGTTGGTCTTAAACTTTCTGAATCAATTTCTAAAATGTGGGAACTCATACTTTTAGAAAATTTTTCTCAATCAGAACTCACGTTAAAATGAGATTTAAATTTTGATGATGCCGCAAAACAGCGATTTTATGTAAAAATCGGATGGGCGATGGGCTCTTTTTGTAATAGTTCCCACAATTTTCAGAGTTTAACTGGTAAATCCATAATTTGCAGTAGTTCCCACAGATTAATTCGTATAAAAGAGTTGTTGAAAAATTTCATAATGGAAATGGAGATTAGGAATAATACTTCAATTTTCCATTTCAATGTAATAAAAGCTGATGGAGAGTTAATTTTTCAATAACTCTATTACTAAAAATGAAATCGTTTTATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 50732-49770 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFLY02000050.1 Leptospira noguchii str. 2006001870 ctg7180000005420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 50731 37 100.0 34 ..................................... AGCAGCAAGCTCTCTTTCTCGATTTTTTGGGATT 50660 37 100.0 35 ..................................... CGTATGATTCGGATCTGCTCAACAGGGCGTCATAG 50588 37 100.0 34 ..................................... TTTTTTAAATCCAAATTTACACTACTCTGACCGT 50517 37 100.0 33 ..................................... AATATCTCCACGAGTCTTCTCAATCTCACCCTT 50447 37 100.0 33 ..................................... AATATCTCCACGAGTCTTCTCAATCTCACCCTT 50377 37 100.0 34 ..................................... AGTGAGCGCAAATAATCAAGGAACAAATAAAGCT 50306 37 100.0 33 ..................................... GCTCTGGGATGAATAGGATTGTATATGTGTCTA 50236 37 100.0 33 ..................................... GCTCTGGGATGAATAGGATTGTATATGTGTCTA 50166 37 100.0 35 ..................................... TGTTCGACTAGAGATTTAGAAAATATCAATTTTTT 50094 37 100.0 34 ..................................... CATACGGTAATTATAATTTTTTAGAATTAATAAA 50023 37 97.3 35 ..........................T.......... ACTTTTGGAAGTTCGACTCCGATGTTTTCACGTTG 49951 37 97.3 36 ..........................T.......... TAACCTCGGTCATGTTGGATTGTGGGATCTCCTCAA 49878 37 97.3 35 ..........................T.......... TAACCGTATGAATTGCGGAAATCAGGGATGTTCCA 49806 37 94.6 0 .................G........T.......... | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 99.0 34 ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Left flank : AGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGGTTTTTTGGTTTCCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAGCACTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGCT # Right flank : AAGAACTCTACAGGAAATATTAAGATGAGCAAAGAATTTCTTTCTCTTATTAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTGTAAAAAAGTATGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTAAATATACAAAATCTATCGTTAAACTTTATAGTAAAATGCAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCAGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTCAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCAAATAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 7975-6790 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFLY02000062.1 Leptospira noguchii str. 2006001870 ctg7180000005452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7974 37 100.0 34 ..................................... TTGTCCGTGGATATGCATATCACGATTTAAAACT 7903 37 100.0 33 ..................................... AATAATATGTTGGAAAGAAGGGGTTAATATAAA 7833 37 100.0 34 ..................................... AACAACAGACTCGTCGGTCGCAAAACGAGGCCAC 7762 37 100.0 37 ..................................... TTACCACAGGTGACAAGGTTGAGGTGTTAGGATTTAA 7688 37 97.3 36 .......................G............. GCTCCCGGCTCGTCGTTTTTAAGAGCGTTCTCGGTG 7615 37 97.3 35 .......T............................. ATTGCCTGTTCGTGGTGTTCCGTAGGCGCCATCCG 7543 37 97.3 35 .......T............................. TTTGTAGTTATAAGTTACTTTATTTCCTGTGATAA 7471 37 97.3 33 .......................G............. CAAATGGCTCCCACTTGATTCTTTGCGTAGTAA 7401 37 94.6 36 .......T...............G............. GTAAAGCATATCTAATTCTTCCGAATTGAGGAGATA 7328 37 97.3 35 .......................G............. TTTCCCTACTTTGTTTTTAAAATAATCGCTTTTGA 7256 37 100.0 35 ..................................... CTTGAGTATAAGATCTACCAGACTCCCATAAGGGA 7184 37 100.0 36 ..................................... CCAAGGACACATCAAACACCCTACCAGACTCCGACC 7111 37 97.3 34 .......T............................. TGTCCGAAAATATTCATCCCGCCATTACCGGGAA 7040 37 94.6 33 .......T...............G............. AAGGAAACGAACGGCCAAGCAATTTCTCGTTCT 6970 37 97.3 36 .......................G............. GCTCCCGGCTCGTCGTTTTTAAGAGCGTTCTCGGTG 6897 37 97.3 34 .......T............................. TTAAATAAGAAAATAAGGAAGAATCTGTTGTAAT 6826 37 97.3 0 .......T............................. | ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 97.9 35 GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : GTTTATAGAGAATTTTACTAGGTTGTTTCAAAGCTAAAAACTTTGCGAATGTTCACCGACGAGTCACTGTTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAATATTTTTTTTAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCTATCTTTCCTGGACTTCCTTGTTATAGGTTCGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCT # Right flank : CTTCGCAAGGAGTTTACAGCAGAATGCAAGAGGAGTTTCTTTCTCTTGTTTGAAGGCTACATAATAGAAGTGTCTAAAATTCCGTTCCTGAAACGGTACTGCTTTCAAAATTTATAATACTCTAATATATAAGATAAATAGTATTTTAGTGAATTGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCGCAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTACGACTGATTTCCATTGAACAAAAGTTAGTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTGTATTTTTACAGACTGAAGCCTCTCTTTCGGAGAATGACTTAGAACTTGTCTCAAAACCGTCCAATATGGGAACTATTACGAAAATGGAACGACATTAGAATTGTTTGAAAGATCGCAAATTGCTAAATGCGATTTAATTTATAGGAATTACTATACTTTAACGTGAGTTCGGCCTAAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : GTTTCTTTCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 196081-197192 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFLY02000062.1 Leptospira noguchii str. 2006001870 ctg7180000005452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 196081 37 100.0 34 ..................................... AAGCGAGATACCTACTACGGAACTGATAACCGTT 196152 37 100.0 35 ..................................... TCGTGAAGAACAAGCTCAAATTATGTTAGCTTTTA 196224 37 100.0 35 ..................................... ACGCTTTGGAATTGTCTTTGCAACATTTTTATCTG 196296 37 100.0 34 ..................................... AAGTTCAAATTAGAATATACGGAGAATAATAATG 196367 37 100.0 33 ..................................... AATTAATTTGCGGTAATGACGACGCACTATCAG 196437 37 100.0 35 ..................................... AACACCTTTACCTTGTTCGGGAGCGAGACCAACGC 196509 37 100.0 36 ..................................... ACTTGGACAAATTTCGCAACGAAAGCTTCTCGTTGC 196582 37 100.0 35 ..................................... ATAAGGAGTCAGGTATTCCAATTGATAAAGATTGG 196654 37 97.3 35 .................C................... TGTTAAATGAATCATTTTTCATCAAAGCCTTTACT 196726 37 97.3 34 .................C................... TGATTATCGAAAAGAATTGAGCAAAATTTCTAAA 196797 37 97.3 34 .................C................... AAGTTTTCGTTCCGCTTTGTTCGCGAGGTTATCG 196868 37 97.3 34 .................C................... AATTCTATAGACTGGGAGAACGAATAACGTGAGT 196939 37 100.0 34 ..................................... TTCTCGTAAGCAGTTCCCCTTGTCTCGGAAAGGA 197010 37 94.6 35 .................CA.................. TTTCATATCAAAAATTTGAAGAATAGTCATTAAAG 197082 37 94.6 37 .................CA.................. GGGATCTCCCGCCAACATGTTTACAAAATTTTAAAGA 197156 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 98.5 35 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : ATAAGCCATAAATTCTGAAATACACAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCCAGTTTGGCCAAAATTCTGGACGCTATGGTTTTTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGACAATCATCTCAACAAAAATGAAAGGATACTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTTACACAAACTTAACAATTCGAAATTCAATTTTCTTGACTTTAAACAGTAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGGCCTTTATAGCCGCT # Right flank : CATTTAAAACATCTTCGAAAAACGTTAAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAACCACCGTAAAGCATCCAGAAGCCACGTAAAAGGCGGTGAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTCGGAAAGTATTACACAGAGAAGATGGAAGACCGGGCTTACAAATACAATTGTTAGTTATACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCAGTATTGGCAACATTTCAAGTGACTAGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 17999-16822 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFLY02000038.1 Leptospira noguchii str. 2006001870 ctg7180000005459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 17998 37 97.3 35 ............G........................ AATCAACGTTGCTCTATCAAACGTAGCTCTTCCAT 17926 37 97.3 33 ............G........................ CGGTTACATCTGTAAACGGACTAATAGGCGCGG 17856 37 100.0 34 ..................................... AGTAAGAGATGGCACACAAACTATTTCTTTTCCC 17785 37 100.0 33 ..................................... TATCTGGGTTCAGAAAACATTTAGAAGACTGGA 17715 37 100.0 34 ..................................... ATTTGTGCCTGTAGACGATCTGTATTCCGTAAAC 17644 37 100.0 35 ..................................... CTCTTATACAACCCTGTGATCCGTCTCCAAAACGC 17572 37 100.0 36 ..................................... CTCTATATAAACAGAATACTCCATTATATCCGGATC 17499 37 97.3 35 ....T................................ TGCAATAAACTCTGTGCTAATTTTACGTCAGCACC 17427 37 100.0 34 ..................................... TTCATCAGACATAGATCCAAAGTCAATTTTATCT 17356 37 100.0 34 ..................................... ACCAATAACAGGATACTAGGCTATGAATATGCCT 17285 37 100.0 34 ..................................... TTAAATTCTATAAGTTATACATGTATTATTATAA 17214 37 100.0 34 ..................................... GAATTCGGAGACAAACAGCAAAAACTCACTAATT 17143 37 100.0 33 ..................................... AACACCTAAACGTTTTTTATCTCCTCTTTTGTT 17073 37 97.3 35 ............G........................ CGAATTCCAAGATCTTGGCTCGGTCGATGTTTCTA 17001 37 97.3 35 ............G........................ TCATTATAATGTTGTTTTTAACTCTTTCTAAATTA 16929 37 97.3 34 ............G........................ GAGTTTACTGTTGTTGTTATAAAACTCAAACCAA 16858 37 91.9 0 ...........GG...A.................... | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 98.6 34 GTTTCTTCCTTTTTTTGAAAAGGAAGTGGATTGAAAC # Left flank : GAAGCGAGATGCTGAGTTCAGGAGGGGTTTGCTTTAGTTTCATAAAATGTGGGGACTAACTACGAAAATTGAACTAGATTAGTATTGCTTGAAAGTTCCCAAAGTATCAAATGAGACAAAATCTGTGGGAACTACTATAGTTTATTAATATTTTCTAAAGAATGATCGCGTAAAATTCTTTGGGTTTTGGGACAGGCTCTAAACTTTTAAATCAATCCTCTGAAAATTCATCCCTAGACATCCAGTTACTTAGCCGTAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACAATTTTATGATAAAGCGCTTTTTGCGAACCTGTTTCTCCCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCGCCGTTTGTCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGTCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTGAGATGAGTTTTGTTTAAAATTTCCAGAATTTATCTGTAAAAATCATGGCTTACTTTAATCCTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACTATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGAGTATTTTCGAGATGACTTTTACCGATCCCTACAAAATTAAGTACCCGTAAATGTAGTAATAAAGTGTCGGTTAACGTGTTTTCGGGATAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCGAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTATAGAGTAGTATTTCTATAAATTCTGTAGACTACAGAATTTATATTGATTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTTTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 30945-31266 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFLY02000021.1 Leptospira noguchii str. 2006001870 ctg7180000005438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 30945 37 100.0 34 ..................................... ATGGTCTTGTTCACAAATTCGACCGTTCCGATTT 31016 37 100.0 33 ..................................... TATGATTTGTGCGGCCTGTTTTGATGACGATAA 31086 37 100.0 36 ..................................... GAAATCGGGCGTATGTAACTCTTTTCGGAAGACAAC 31159 37 100.0 34 ..................................... ACAATTAATCTGACTCAAAATTAACTGGGATCGG 31230 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : TCAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGTACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTCATAATTCAGATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATATTAGATTTTACAACAAACCTAATTTCAAAATTAGCAAGCAAACGTTCCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATGTTCTACTTTTTTAATCTATATTATTGACCCCGGAAAGACGATTATTTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : CGATTACTTATATAGTTTTCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTCAGCGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTCTGGTTTCATTTTCACCGGTTTTTGGATGTTTTTCGGTGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAAGTAAAATTGAACTTCTTTTTTAGAAAAGAGTAAATTGAAACCTCAATCGTCAGAATCCAATTAGATTTCATGTTTGAAATTCTCTAAAAGTCTGTCTCAAGCCTAAAATGATCAAGATTTGATCATGGAAATTTCACAAACGCCAGATGTGGCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 12426-10812 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFLY02000013.1 Leptospira noguchii str. 2006001870 ctg7180000005458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12425 29 100.0 32 ............................. GATGAATCAAGCAGAGATTAAGCGCTTTGAGG 12364 29 93.1 32 ..........................GT. TTCTTCCATCTGGCTCTACTCTTATTTTTTGG 12303 29 100.0 32 ............................. TGGACCCGATGCGGTTGATGAAATCCAATTTA 12242 29 100.0 32 ............................. CGGACAATAGTGATAAACCTACATTTGATTTA 12181 29 100.0 32 ............................. TGGTTGGAATTTTGTGCATTAGGTCCTAAGGA 12120 29 100.0 32 ............................. GATGATTTTGATGGACTATTGAATATTACAAA 12059 29 100.0 32 ............................. ATCATAGACCTGCTTTTAGAATTTGCAGAAGA 11998 29 100.0 32 ............................. CGAATAAATATATGCGATACCTACAAACTATT 11937 29 100.0 32 ............................. GCCTCGAGAAACACTGGATACCGATCTATTCA 11876 29 100.0 32 ............................. GGAATGTTAATTCGCTCGAATCAAGAACAGTT 11815 29 100.0 32 ............................. GACAAAATTATTCCCGCCTATTTCCCTTTTCC 11754 29 100.0 32 ............................. ATAGCCTTCGGGCTATATTCAAAGATTTTTAT 11693 29 100.0 32 ............................. TTTATCCATACGGTCTAATATTTTTTTCGGAA 11632 29 100.0 32 ............................. TTAACGCTGATGAGATTGCAAAAAGAATTTTT 11571 29 100.0 33 ............................. AAGTTTATAAAAAATTCCGATTGGGTTCTAAGC 11509 29 100.0 32 ............................. AAAGCCACACGTGAAAATCACGTCTGGACCTG 11448 29 100.0 32 ............................. AATCCGAATGGATTGCTCGTATTTTCGAGCAG 11387 29 100.0 32 ............................. GACTTGGAAGTATCGTTACATTAAACGAAGAA 11326 28 96.6 32 ...............-............. CATCAGGGTGCCGAAGTATTTAGTTGATAGAG 11266 29 100.0 31 ............................. GCCGTTTGCGAGTAGATAAACTATTCGTCGC 11206 29 100.0 32 ............................. ACCTCCTCAGTAATTTATTTCCTAGAATCCCA 11145 29 100.0 32 ............................. AATAATACAACTATGTATATTTTAGCGGGTGC 11084 29 100.0 32 ............................. AGATATATCGATTTGATGACTTCTTGCTCGCT 11023 29 100.0 32 ............................. CAGCAGAGGCTGAAGAGGTCAGTTTTTAGGAA 10962 29 96.6 32 ......................C...... CAAATGGAGGGGATCTTTTAAAATCAATTCGA 10901 29 100.0 32 ............................. GCGACCAATCGCGTTTTAGACTGGGCTGTAAA 10840 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : ACCTATTCCCCACAGGCGTGGGGTTGAACCGGGCAAAAAATCTAATGCAATCGGCGAGGCCATCTATTCCCCACAGGCGTGGGGTTGAACCGAGACGAATGAGCAATTCACTGGGGATTTTTTTCTATTCCCCACAGGCGTGGGGTTGAACCGGGGTCGGCAATTATATTACCGAGACTAAAACCTATTCCCCACAGGCGTGGGGTTGAACCGAAACATTAACTAATGTGAGTTCGGCATAACAAATGCGAAAGCGATTATTATGCTGCGATCCATAGTGAGCAGCATTGAGTTTGAAAAATTCCGAAGGAATTGGAGCGAAAACGAACAACTCAGCGTCTCGCTTCTATGGTCGCTCGACGTAAACTCAGCGTCTCACTCCACTATGAAATTTGCGAGCTGCGACGACGACCCGTAGAGAGTCGTTGCATTGAGTTTATTATTTGCCCCAATTTTCTTACGTCGAACTCACGTTAACTACGAATCCTTGTTGAGCAGAT # Right flank : AGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAGCTTGGCCTTTACTTTGCTGATCCGGCAAACCACTGATTGCTTGTCTTTCCTTTACAACATATATACTACGATAGAGAGTTTGTCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCTCCAACTGTCCTCAAGACTTTCGTAATAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTACGACTCGTGTGAAGCGAAGGCGAAACACGAAGTCGTGGGCGTGAAAAAACAAAAAAGCCAGAACTGTCCTCAAGGCTTTCGTAATAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTGCGAATGCGAGGTTACGACTCGTGTGAAGCGAAGGCGAAACACGAAGTCGTGGGCGTGAAAAAACAAAAAAGCCAGAACTGTCCTCAAGGCTTTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12985-12713 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFLY02000013.1 Leptospira noguchii str. 2006001870 ctg7180000005458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12984 29 100.0 32 ............................. TAGAGTTCCACCGGCTGGAACTGGTGGAAAAC 12923 29 100.0 32 ............................. GGCAAAAAATCTAATGCAATCGGCGAGGCCAT 12862 29 100.0 32 ............................. AGACGAATGAGCAATTCACTGGGGATTTTTTT 12801 29 100.0 31 ............................. GGGTCGGCAATTATATTACCGAGACTAAAAC 12741 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTCTATTCGAGCAACACCGGACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATCAGATCTACTATACAAATTCTTAGA # Right flank : AAACATTAACTAATGTGAGTTCGGCATAACAAATGCGAAAGCGATTATTATGCTGCGATCCATAGTGAGCAGCATTGAGTTTGAAAAATTCCGAAGGAATTGGAGCGAAAACGAACAACTCAGCGTCTCGCTTCTATGGTCGCTCGACGTAAACTCAGCGTCTCACTCCACTATGAAATTTGCGAGCTGCGACGACGACCCGTAGAGAGTCGTTGCATTGAGTTTATTATTTGCCCCAATTTTCTTACGTCGAACTCACGTTAACTACGAATCCTTGTTGAGCAGATCTATTCCCCACAGGCGTGGGGTTGAACCGGATGAATCAAGCAGAGATTAAGCGCTTTGAGGCTATTCCCCACAGGCGTGGGGTTGAAGTGTTCTTCCATCTGGCTCTACTCTTATTTTTTGGCTATTCCCCACAGGCGTGGGGTTGAACCGTGGACCCGATGCGGTTGATGAAATCCAATTTACTATTCCCCACAGGCGTGGGGTTGAACCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //