Array 1 17811-16945 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXAV01000048.1 Acidithiobacillus sp. SH contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17810 28 100.0 32 ............................ GAAAGGTGGACGTTCCGAGAAAATTTAGAATC 17750 28 100.0 32 ............................ GAAAGGTGGACGTTCCGAGAAAATTTAGAATC 17690 28 100.0 32 ............................ GCTCTGCTGGCTGCCCGGGATTCTCGCGACTT 17630 28 100.0 31 ............................ TCGCAGGGCTTTTTTGCGTCAAGGAGAGATG 17571 28 92.9 32 ..A.........A............... TTTTCTGGCTCAGTGTGGGAATACCGCGCGAG 17511 28 85.7 32 ...CG..................GT... GAACAGTTGGATGCTGCACGACTGGATGATTT 17451 28 89.3 32 ...C...................GT... TTGGCGGCGGCGTCTGCGCCCAACGGCTTGAG 17391 28 100.0 32 ............................ GCCTGGCGCGGGTCGAGTGAGAGTGTAATTTG 17331 28 96.4 31 ...C........................ CAAGAGCCGATTCATATTGGCGCACATTTTT 17272 28 85.7 32 .G.CG...................T... CTCCGGGGGGATATACAAGGGGGCGATTAAGT 17212 28 96.4 32 ........................T... ATCCGGCTCAAGCCAGAAACCCGGCATCTACT 17152 28 100.0 32 ............................ GCAAACCGTGAGAGGGCAGTATCTTATCCAGC 17092 28 96.4 32 ........................A... GTATCTGAGGGGATGATGTCCAGGGCGACGCC 17032 28 96.4 32 ........................T... ATCCGGCTCAAGCCAGAAACCCGGCATCTCCT 16972 28 67.9 0 ...C................AAACTTCA | ========== ====== ====== ====== ============================ ================================ ================== 15 28 93.8 32 GTGTATCGCCGCGTAGGCGATTGAGAGG # Left flank : CTGAGAGCGACTATAGCTGCGTATTGTCTCCAGTATTTCATGCCCCCCCGGACGAAGCCATCCAGGGATGGGAGGCGTTTATGATGCTGAGGCTCCCATCGGGTGTATCGAAGACGCGGAAAAGTATTCCCCTGGATCAGGCAATAGCCTTACAAAAACAAGCATGGGAACGTCGCGCGCTAGACCTTAAAGGCAAGCCTTACGTGCTGATGATGGCATCGTCGAGCGGGCAGCGTTTTCGGCTCACCGTAGACCGCCAGGTGCTCACCGGCACGTCGTCGGGCGGCGGCGAACCCAACGGTTACGGGCTATCGAGAGCCACCCAGACGATTGCTCTGCCATGTTTGCCTGATAACAGATAGAGAACACCTTGCAAATCCGCAGCAAGCACAAGATGCTGAATACTAAAAATAAATGCCAGACAAGCGTAAACAAAGTGTTGCAGACAAGAATCACCGCAAGCCACTGTAGTTGCAGAGCGTTTTACACATAGATTTACG # Right flank : TGTTTTGACTATTTTTCATGTACTATATAAGCATTGTCAGCATAAAAAAGATAGTTTAAATGAAGAAAATCTGTAAAAACCTGCGGATGAAAATAAGGAAATACATCGGCATATCACTGTTTTTTTCCGCAATAGCGTGTATACCACTGTTAGCAAGTCCTGCCATTGCAGCCGCGCGACCACACGCGGCAGAGCGATACCTGGATCGTATGGCATTGGTCGATGCCAGAAATGACTTTACACAGGCACCCAAACCAAGCTACGTCCTGGACAAAAACTCTGTGGTTCGCTTTTCGGAAGATGGCCCAACCGGCCTCATCATCATTGGTGACAGTATCCTGACAGGCTGGTCAGGATATTTTGCGCACGTTTTTCCGAATGCACTGATCGATGGGCGCGTAGGGCGCCAGTTTTCATCCGCTATCCCGATATGGGAAGAACTGCAGAAAACAGGGTTAACCAGGAACGTTGATTACGTGGTTCTGGAGCTCGGCACCAAT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTATCGCCGCGTAGGCGATTGAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCATCGCCGCACAGGCGATTGAGAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //