Array 1 534541-536729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSB010000003.1 Pseudomonas aeruginosa strain PA764 Scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 534541 28 100.0 32 ............................ TGCAAGACCTGCTAGCAGAAAGAGTCACCCTT 534601 28 100.0 33 ............................ GAGGTCGACGGCAAAGAGTGCCCGATGACTCAG 534662 28 100.0 32 ............................ TGTTCCAACTCGATGCTGCGTGCGGTGCTCCG 534722 28 100.0 32 ............................ TGTTCGAGGAATTCATCGAGCACCACAAGGAG 534782 28 100.0 32 ............................ GGGAGGGAAGGGCAGGCAGAAACGAAAAGCCC 534842 28 100.0 32 ............................ TCGAGCTTGTCGAATCCCCTCAAAAACTCCCC 534902 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 534962 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 535022 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 535082 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 535142 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 535202 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 535262 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 535322 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 535382 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 535442 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 535502 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 535562 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 535622 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 535682 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 535742 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 535802 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 535862 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 535922 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 535982 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 536042 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 536102 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 536162 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 536222 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 536282 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 536342 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 536402 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 536462 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 536522 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 536582 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 536642 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 536702 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 546602-545254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBSB010000003.1 Pseudomonas aeruginosa strain PA764 Scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 546601 28 100.0 32 ............................ AACAATGGAAGACTTGCAGTCAGCATTCAGCA 546541 28 100.0 32 ............................ TTCACCAAGGAGTTGTACGCATTCCCCGACAA 546481 28 100.0 32 ............................ TGAATCTCAGACGCCTTCACCATGCACGACAA 546421 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 546361 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 546301 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 546241 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 546181 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 546121 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 546061 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 546001 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 545941 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 545881 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 545821 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 545761 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 545701 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 545641 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 545581 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCTG 545521 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 545461 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 545401 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 545341 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 545281 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //