Array 1 1869981-1867028 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQFY01000004.1 Leptospira koniambonensis strain 201800265 contig_0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1869980 29 100.0 32 ............................. CCAACTGGTGGAATTGTAGACGTTTCTGAAAA 1869919 29 100.0 32 ............................. ATATTTCGACCATAGAGATATAGATCTGATTC 1869858 29 100.0 31 ............................. GTGGCAAAATGTTTAAAATCAATCTTTTAGA 1869798 29 100.0 32 ............................. GCCCAGAAACATGTGACAATCGTTTTGAATAC 1869737 29 100.0 32 ............................. GCAAGAGAAACCAGGAATTCGCAAGAGTGCAA 1869676 29 100.0 32 ............................. TATAATTTTTCCTGACCCTTAAGCCAAATTAT 1869615 29 100.0 31 ............................. GACACGGTTTATCCATATTGAAGTCCTTCGA 1869555 29 100.0 32 ............................. TCAGTTATTGGCCGGTAGTTCATTTCTGACTC 1869494 29 100.0 32 ............................. AATATGAAGATGGAGTTCCTTCTACAGATCCT 1869433 29 100.0 31 ............................. CCGCACAGAAATGCGAATGGTGCGGCGTTGG 1869373 29 100.0 32 ............................. CAAGTTCTGTCCGATTTTCAAAAGCAGGCCAA 1869312 29 100.0 32 ............................. CTAAATTAGTAGCATTCCATCTGTCCCAGAAA 1869251 29 100.0 32 ............................. CAAGGAGCAATGGAGAGATCAAATCTTTTGCG 1869190 29 100.0 32 ............................. ATATTGCACACCCGCTAATGTCGTAGCCCAAA 1869129 29 100.0 32 ............................. TATTGCTAAGTTAGCGGCAGGTTTCTTTTTAA 1869068 29 100.0 31 ............................. TAATAGAAGGTCTTTGTAAAATCTCACCTTC 1869008 29 100.0 32 ............................. AGTTATATTCATGGCACGAATATCTAGCTGCT 1868947 29 100.0 32 ............................. ACAATGAAATTGTGGCTATGCTTACGGTAGTG 1868886 29 100.0 32 ............................. TATGATAGTGTCCAAAACTTCCATGAAAATAA 1868825 29 100.0 32 ............................. GGATAGTTTTGAGGATAGATATAGACCTGGTG 1868764 29 100.0 32 ............................. GAATGTTTAAATCTGGGATTCCTTCTTCATCT 1868703 29 100.0 32 ............................. CCAATCAGCTCTTGACTCATCTATCTTCAAAA 1868642 29 100.0 32 ............................. GTTTCTCATTATCGTTATATGTTTGAGGTTGT 1868581 29 100.0 32 ............................. ACTCGTTTCCCTAAACGTGCTGTGCGTATCTT 1868520 29 100.0 32 ............................. CATCACACCTTACAATATCACCTTCATAGATA 1868459 29 100.0 32 ............................. ATTAGCTTGGGTATTTACAGAAATGCGTATCC 1868398 29 100.0 32 ............................. CGTCCGCCTTCATGACCTGTTGCAAACGAAAC 1868337 29 100.0 32 ............................. GAATCACAAGATCAGTAAACCAATCGTCGCCC 1868276 29 100.0 32 ............................. TGAAAGGAAAAGGAAAAGGAAAAGGTAAATAA 1868215 29 100.0 32 ............................. CCATCTATTTATTTCCTGAAGCCCTCTTTTGT 1868154 29 100.0 32 ............................. TCAGGCGAGTGCATCTATTCCTTTTTCTGTTC 1868093 29 100.0 32 ............................. AGAATCTCTGATGCTTCCAATATGGAAGATCT 1868032 29 100.0 32 ............................. ATCGAATCGTTATCGCCGCCATCAAATTCATA 1867971 29 100.0 31 ............................. TATCACCCATGACTGTTTTAATGTGCGCGGA 1867911 29 100.0 32 ............................. TGGATGAAACTATTCGAAAAGAATATTTTAAA 1867850 29 100.0 32 ............................. GATTCTGTAAACTGTCAGAGGGAATATTTCTG 1867789 29 100.0 33 ............................. GAACGTTTCTGGAATGTAGAGAAGGAATAGCGG 1867727 29 100.0 32 ............................. TTCTATGATCTTCCCTAACCCTACCTATCCAG 1867666 29 100.0 32 ............................. CTACGCAATGGTTTAAAAATGGGGATCACCCA 1867605 29 100.0 32 ............................. CTTGCTCGAACAGAAGTAGAAGCAGAGATCAC 1867544 29 100.0 32 ............................. TAGTGCTGCCAATGCTAGCGAGGGAGGGGTGG 1867483 29 100.0 32 ............................. TATATTGTTCTGATTAGCTCAAAGGTAGAGCA 1867422 29 100.0 32 ............................. ATCTACAGTCCAATCCAAGCGACTACATTTTA 1867361 29 100.0 32 ............................. CTTTCAGACAACCGGAAATATATTATGAATTT 1867300 29 100.0 32 ............................. CCTCTAATCTATCGGCTTTAGCTGCGGAATAA 1867239 29 100.0 32 ............................. GAGAAGAATCAGTGAACCCAGATCAAATATTA 1867178 29 100.0 32 ............................. AATCCTATTACTTTTTTATTAAAAAGACATGA 1867117 29 100.0 32 ............................. TGTTGGAACGATGCTCGCGTTAAAACCGGGTC 1867056 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 100.0 32 CTATTCTCCACGCATGTGGGGATGAACCG # Left flank : TTATTAAAACGTATTATTCCCGATACAAAGGAGTTGATTTATGGTAGTACTGATCCTGGAGAGGGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGATTAGCCATTGAACTGAAACCTGGCGTTTTTGTTGCAACTGTAGGGGCAAGGGTTCGAGACCAAATCTGGAAAAAAGTATGTGATGAATGGAAATCAGATGCATTAATGCTATATTCCAGCAATACAGAACAAGGATATGTAATCCGCTCTAATGGGGATCCGTCCAGAGAAATCGTAGAATTTGAAGGCTTATTATTAATGGCGAAACCTGATCCAAAAGCAAGCCAGAAAGACTCGGATGAAGTAAAGGAAAGTTCTGAAACGGCGACCGAATCTCCTTCTCCATTCTTAAGTCTTGAAGATTTTTTTCGTTCAAAAGCAGATTCCCTTTCTTCAGAATTAGATAACGATAAAGAATAATTCAATAGACATAATATTCAATTTTCCTATACAAGTTCTTAGC # Right flank : TGGTACCCAAAAGATTTGCGTGGTATTATCGTTATATTCCCCACACAAGTGGGGTTCTCCCCCACAAAACAAAAAAACCAGAGAATGCTCTCTGGCTTTTTAAATAACCTTCAACATTGAATATAACTTTGAATTGAGCTGTTTGCTGATCATCATGCATGCATGGATGTTCATATTTTCAGACATCTTTTATGGATGCCTATGGTTTGTAAGACATCAGTTAAGATGTCTTACTTGGCGTTGTTACCACCAAAGAAGAGTAAGTCTTCTTTGGAACTTTCGTAATATGGTCAAGCCTCACGAGCTATTAGTATCACTCGACTCAATGTGTTACCACACTTACATCTATGACCTATCAACCGGGTCATCTTCCCGGGCTCTTCAGGGGGTTACCCCCAGGGAGATCTTATCTTCAGAAGGATTTCCCACTTATATGCTTTCAGCGGTTATTCCTGCCGAACATAGCTACTCAGCGCTGCTTCTGGCGAAACAACTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCTCCACGCATGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTATTCCCCACTCATGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //