Array 1 254181-256792 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQGV01000015.1 Pseudoalteromonas aurantia 208 contig013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================================================================================================================================== ================== 254181 28 100.0 32 ............................ ATCAATAAAAGGCTTCAGACCCACTTTTAATA 254241 28 100.0 32 ............................ TTCAAACATGCTGTTAGACTCAACGTCCCAAC 254301 28 100.0 32 ............................ TTTAATCTAGATAGTAAAGTTGTGATGTTTTC 254361 28 100.0 32 ............................ TGTGACTGCGCCCAATTCGTCACCAAATAATA 254421 28 100.0 32 ............................ AGTCGACGGCGGTGGTGGCGGCGGAACTCCTC 254481 28 100.0 32 ............................ TTTTGTCTTTGGCCAATAGCGAAGAGCAGGAT 254541 28 100.0 32 ............................ GCTGATAAGGCAGGGCCGCAAAATACATACAA 254601 28 100.0 32 ............................ GTTATCATTTTTATAATGGATTTGCTGGCTTT 254661 28 100.0 32 ............................ GAAATAAGCAGCGCTTCTGCTATCTTCATTGC 254721 28 100.0 32 ............................ TTTAACGCTTTGTGATGCCGATTCTTTAACCT 254781 28 100.0 32 ............................ AGCTAAGAATAAATCCTTCATACCTAAGTCGA 254841 28 100.0 32 ............................ ATTAGCACTTGTTGCACTGATGTTAACTTACT 254901 28 100.0 32 ............................ TTTTGTGTAGTTTCCTATACCTGGAGACTTAA 254961 28 100.0 32 ............................ ATTCTCCACTTGTCTGAACACTCAACTCTGTC 255021 28 100.0 32 ............................ ATGCTTGAGCCGTAGCCTTTCATTGTGAAATC 255081 28 100.0 32 ............................ TTTAGTTTTTGGTCTTTCAACTGAGCGAGCTT 255141 28 100.0 32 ............................ TGTTATGGAAATGGAATCAAGCAATAGCAGAT 255201 28 100.0 32 ............................ AAAAGCATCGAGTACCACGTCACCCTCTCTGC 255261 28 100.0 32 ............................ AAACCAATATTCTCAGGCGCAGTTTTCTCAAA 255321 28 100.0 32 ............................ TTCTTTCTGTTTACGCTTAAAGAATGTATTTT 255381 28 100.0 32 ............................ ATAGTTTGTTGCATTGGGACAACTTCATTGTT 255441 28 100.0 32 ............................ ACATAGAAACCGTCAATTTCTTCAACATGTAA 255501 28 100.0 32 ............................ TGTGCTGCTTGCATTGTATCAAGCTGTCGTTG 255561 28 89.3 152 .........................GCG ATGAGTGACCGAAACGTAGTTTCGCAGCACGAAGAAGTGAGGTCATGGATGACCGATGTGACCCAGCTCCATGGATGGATTGTTTACGCTTAAGTGGCAACTTTATGGACCCTGAAGCAAGTTCAGGGCGACGAAGATGGGTGATTCGGTAT 255741 28 78.6 162 A..T....A................GTG TTGGAGGAGCGAAACACTTTCATCTCATAGATGGCGCGGCACTTCGATGTGAGGTCATACACACCCCGTCGTCCTGACGCAGGTCAGGATCCACAATACCGCATATGTTTCAACATGGACCCTGAAGCAAGTTCAGGGCGACGAAGGTGGGTGATCCTGTAT 255931 28 89.3 196 A.GG........................ ATCATCGGCCCAGCGGCGAATACTGCGGCCACTGTTGGAGGAGCGAAACACTTTCATCTCATAGATGGCGCGGCACTTCGATGTGAGGTCATACACACCCCGTCGTCCTGACGCAGGTCAGGATCCACAATACCGCATATGTTTCAACATGGACCCTGAAGCAAGTTCAGGGCGACGAAGATGGGTGATTCGGTAT 256155 28 82.1 182 A..T.....................GTG TTGGAGGAGCGAAACACTTTCATCTCATAGATGGCGCGGCACTTCGATGTGAGGTCATACACACCCCGTCGTCCTGACGCAGGTCAGGATCCACAATACCGCATATGTTTCAACATGGACCCTGAAGCAAGTTCAGGGCGACTGAAGCAAGTTCAGGGCGACGAAGGTGGGTGATCCTGTAT 256365 28 78.6 162 A.GG.....................GTG ATGAGTGACCGAAGCACTTTCGTTTCATAGGTGGCGCGGCACTTCGATGTGAGGTCGTACACATTCCGTCTTCCTGACGCAGGTCAGGATCCACAATACCGCATATGTTTCAACATGGACCCTGAAGCAAGTTCAGGGCGACGAAGATGGGTGATTCGGTAT 256555 28 82.1 182 A..T.....................GTG TTGGAGGAGCGAAACACTTTCATCTCATAGATGGCGCGGCACTTCGATGTGAGGTCATACACACCCCGTCGTCCTGACGCAGGTCAGGATCCACAATACCGCATATGTTTCAACATGGACCCTGAAGCAAGTTCAGGGCGACGAAGGTGGGGGAAGGGCGATGAAGGTGGGTGATCCTGTAT 256765 28 78.6 0 A.GG.....................GTG | ========== ====== ====== ====== ============================ ==================================================================================================================================================================================================== ================== 30 28 96.0 61 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGACAGAGATTAATTTTATTGTCTTCTTGAACTTGATTCAGGATCTTTTGAGGGTGAATAGTAACAGCTGACAGAGATTAATTTTATTGTCTTCTTGAACTTGATTCAGGATCTTTTGAGGGTGAATAGTAACAGCTGACAAGGATTAATTTTATTGTCTTCCTGAACTTGATTCAGGATCTAGTGAGGGTGAATAGTAACAGCTGACAGGGATTAATTTTATTGTCTTCCTGAACTTGATTCAGGATTTAGTGAAAACGGAAAATACAATAATAGGCATATGACATGTTTGAATTCAGTAATGTGTGGTTAATTATTAGCAGGTGCGGATATTGCATGTCATTATCGAATCTAACATGATGAAAATACCCTATTATTTTGGCTCTTTAAAAAGTAATTATAAAACAATCAGTTAGAGTTAGTTGTTTTTTATATGGTTAAAATGGTATTTTGACCGTAACGAATTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : GATGAGGGGGCGAAACGTTTTCGTTTCATAGGTGGCGCAGCACTTTGATGTTAGGTCATAGACCCCGTCTTCCTGACGCAAGTCAGGATCCATTGACTCAGGGTCACATTACCGTGCAGGCCGTTTAAATGATTAACACTTAACACATCTGGCTCTTTGCAAATGAGAATACGTTAGGTCGTTGTGGCACAATATAAACTCTTTCAGCTAACAGTCTACGTAAAAAGAATTGGTTTTTGTGGTTGATTTGTTTCTGTATGTTGGTAGTTTGTATATTAAATAAAGGATATAAAAGTTGGTAATTCGCAATGGTCATTCGCAAAAGAAACATATTATTCCTATGTAATGCATTTATTCTTTCAGCATGCAGCTTTAATCAAAACCCTGAAGGCTCTTATAGCGGGGGAGACCGCGTTAATATGGCTGGTGCTGCACAACTATTGCCACCAAATAGTTTTGTGACGATTGACTTACCTCCCATGATTGCTGATATGACTCGA # Questionable array : NO Score: 3.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-2.66, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 268231-270115 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQGV01000015.1 Pseudoalteromonas aurantia 208 contig013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================================= ================== 268231 28 100.0 32 ............................ TTTGCCGCCACTAATACGCTCAGGCATAACAA 268291 28 100.0 32 ............................ TAATGGCCTGCGCGCCTGAAATGTATGGTTAT 268351 28 100.0 32 ............................ GGTAATTAAGTATTCAAGACTTGCGCTAATTA 268411 28 100.0 32 ............................ TTGCACATCAAATGAGTTTGCTTGAACGTTAG 268471 28 100.0 32 ............................ TTACTTCTGTACACTGCTATCGCATCAACTTC 268531 28 100.0 32 ............................ AGGTTTTAAAGTTAATCATATCCATATCTGAG 268591 28 100.0 32 ............................ AATAAAATCATCGAGCCAATCTGAGTTTTCAT 268651 28 100.0 32 ............................ AGTATAAAGATTTGTCTGTCGATGCTTCGTAC 268711 28 100.0 32 ............................ TTTAGTGCTTGCAGAGGGTGGCAAACGGTACA 268771 28 100.0 32 ............................ ACTCCAATTCATCAACATGGATACTCTCAATT 268831 28 100.0 32 ............................ AGCAACGGATGGGCGTATACCCGAATCAATAT 268891 28 100.0 32 ............................ ACTTTGTGAACCGTGAATTTGAATGATTGGCA 268951 28 100.0 32 ............................ TCAATGGCGACTTGCAATCACTCAACTCAGCC 269011 28 100.0 32 ............................ TGACTATGACGGCCCACAAACAATACAGTTAA 269071 28 100.0 32 ............................ CAAAGCGCTGCGCTGTCTTCAATACATTGGAT 269131 28 100.0 32 ............................ ACTTGGATGAACCAAGCAGAGTTTCCGAATAT 269191 28 100.0 32 ............................ TCAACTCAGCCTACGAAGGTTTGCAGATAGTC 269251 28 100.0 32 ............................ CTAAATTTTAGGCTGCTGTCCCAGTTGCTGTC 269311 28 100.0 32 ............................ CCTGACGCGTCCACAAATTCAGGCATGTTGTT 269371 28 100.0 32 ............................ TCAATCGGGGGCCGTAAATGTCTTAAGTGCGA 269431 28 100.0 32 ............................ AGCCGCATATTTATAATTGGCTTAATGGCAAT 269491 28 100.0 32 ............................ ATATGGTACCACTCAGTGCAAATGGGATACGT 269551 28 100.0 32 ............................ ACCTCTTGCGTTTTTACATCAATTGAAAAGGC 269611 28 100.0 32 ............................ ATCATACTGTCTTCAGTTTGACTTGACGTTAG 269671 28 100.0 32 ............................ TTATTAGCCCGTAGTTATTGCGTTCAATTTGC 269731 28 100.0 32 ............................ CAAATTGAGGCTGCTTTCAAATCAAGCGTGGC 269791 28 89.3 32 A.........G.A............... AGAAACAGACACCTCGCCACCATCTTTCACAG 269851 28 78.6 209 A.........G.A............GTG ATGAGTGACCGAAACGTTTTCGTTTCATAGAGGGTGCAGCACTTCGATGTGAGGTGATACAAACCCCGTCTTCCTGACGCAGGTCAGGATCCACAATATCGCATATGTTTCAACATGGACCCTGAAACCAGTTCAGGGCGACGAAGTTGGGTGATTCGAACACAGGCAGCTTAGAGGTTTCGCGTATGTCTCAATCACCTCGTTCTTGT 270088 28 85.7 0 G........................GTG | ========== ====== ====== ====== ============================ ================================================================================================================================================================================================================= ================== 29 28 98.4 38 CTTCACTGCCACGCAGGCAGCTTAGAAA # Left flank : CCAGATGAGGTCAGTTATGTGAGTTTTACGCGAAAAAATGTTAAAAGCCCTGAGCGTATTGAACGTGAAATGGCAGAAAAAGCTCAGCGGTGGTCTCAAAAAAGCGGTAAGCCATTAGAGGAATGCCTAGCTGAACTTGAGCAGACAAAACCTGAGTTAAATATCAAGCACCCCTTTATCTTTTTGCATAGCCAACAGACCAAAGCGAAAGCACCAGGTAAAAACAGTAAGTACCCACTATTTGTTACTATGCAAGAACGCGAGAATGATACAAATGGCACATTTGATTGTTACGGATTGAACGCAAAGGTAAATGATGAAAACTCGGCTGGGTGCGTGCCTCAGTTCTAATAAAAGAAAGGGTTTTTTACCCTTTATTTTTGCTCTTTAAAAATTGGCAATAAAAACAATAAGTTGTGACATGCTATTTTTAACAAGGTAAAAATAGGTTTTTTACCTTAATAGTCTGTTGCAACTTATCTTTTTTCATTTATTCTATA # Right flank : GATGAGTGGCCGAAACGCTTTCGTTTTCATAGGTGGCGCGGCACTTCGATGTGAGGTCGTACACATTCCGTCTTCCTGACGCAGGTCAGGATCTACAATACCGCATATGTTTCAATATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGGAAGGTGGGGCAAGGGCGACGAAGGTTTAGTTTAAGATGAAGGATAGGGACACAGAGCGTTTTTTATGGCTTAGTGTTGAAGTAACAGTAGCAACTAAAAATATCGTTGTAAGTTGGGCTTACTATGCTGACTCAGGCGCTTTAGATATTGCTTTCTCAGGTTTATCCTTGCCATTTTGAATTTGGGCTGCGTGTTGCTGTGAATACATAAAAAACCATATGTGCCTTCTTCGCTGTGTCATTTTTTTCATAGTGCAAACCCTTTGCATGACTTATTTCACTTTCCCCGAAGGGGGTTCTATTTGGTACTTCACAGTGTACCGTGGGCCTATTTAATAGCACATATG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCACGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //