Array 1 65-642 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTR01000110.1 Escherichia coli strain MOD1-EC5063 MOD1-EC5063_279_length_678_cov_3.02829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 126 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 187 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 248 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 309 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 370 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 431 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 492 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 553 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 614 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : ATTCTTGATCACGCTTTTACCGAAGTAATGGTGTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63760-62388 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTR01000001.1 Escherichia coli strain MOD1-EC5063 MOD1-EC5063_1_length_632556_cov_62.425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63759 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 63698 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 63637 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 63576 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 63515 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 63454 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 63393 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 63332 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 63271 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 63210 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 63149 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 63088 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 63027 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 62965 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 62904 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 62843 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 62782 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 62721 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 62660 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 62599 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 62538 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 62477 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 62416 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90650-89462 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTR01000001.1 Escherichia coli strain MOD1-EC5063 MOD1-EC5063_1_length_632556_cov_62.425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90649 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 90588 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 90527 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 90466 29 100.0 32 ............................. AACAAGCTCGCCCAGCCCGTCCTCATCAAGGG 90405 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 90344 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 90283 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 90222 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 90161 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 90100 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 90039 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 89978 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 89917 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 89856 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 89795 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 89734 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 89673 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 89612 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 89551 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 89490 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //