Array 1 144254-144891 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQS01000002.1 Lactobacillus crispatus strain UMNLC2 Lcrispatus9C4S15111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144254 29 100.0 32 ............................. AAGATGATGACAATTCTTTCTAGTTTGTGAGG 144315 29 96.6 32 ............................T CACACTCGCCTTAGCATGTCTAGTGTTTGTCA 144376 29 100.0 32 ............................. GTTGAAGTAGGTGATAGATTTGCAAGTATTGC 144437 29 100.0 32 ............................. AATGCTCAAACGTTAAATTTGGTTGATAAAGA 144498 29 96.6 32 ............................T TCAAAGATCCGGTTCACATCTACTCAAATGAA 144559 29 100.0 32 ............................. GTTTGGGACTTTGTATCTGGTAAAGACTGGCA 144620 29 93.1 32 ..........T.................T AAGCCTGCCGGATAAACGGACGGGCTGGTATT 144681 29 96.6 32 ............................T ACCTTGCTTACGATTACTATGGCTACTATACT 144742 29 96.6 32 ............................T GTTGGTGCATTAATGGAAGATGCATATTTAGA 144803 29 100.0 32 ............................. AAGGCTGTCAATATCACCGTTCCAACGTGGCT 144864 28 82.8 0 ..............C.......-C...TT | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : TACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 441-1018 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQS01000065.1 Lactobacillus crispatus strain UMNLC2 Lcrispatus9C4S1518, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 441 28 100.0 33 ............................ TTTTTTGCATCCCATAAGACCAGCTTTTTTGAC 502 28 100.0 33 ............................ CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA 563 28 100.0 33 ............................ TTCCTGAGCCAGCATCTTCCCATTTCTTATGAA 624 28 100.0 33 ............................ CTAAAACTGCAGCCAGAAAATGGGAACGTGACG 685 28 100.0 33 ............................ TGGTGATCAATGGTATCCATTGGCTTCAGGAGG 746 28 100.0 33 ............................ TGCAAGTGACCTAAACAATAAGGCTGATAAATC 807 28 100.0 33 ............................ TGCAAGTGACCTAAACAATAAGGCTGATAAATC 868 28 100.0 33 ............................ TTACCGGCTGCATCTACTACTTTTTCACCTTTC 929 28 96.4 33 ..................A......... TAGAAGACAAGCGAATGTGGAAGTAGGCAACAA 990 28 85.7 0 .......................A.ATA | C [1012] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTATTCTCCACACATGTGGAGGTGATCC # Left flank : TTTAATTTTACAATCAGCGAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAACATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCCTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTGACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGTG # Right flank : AGCTGCTCTGAAAAATATTTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 3746-4568 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQS01000065.1 Lactobacillus crispatus strain UMNLC2 Lcrispatus9C4S1518, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3746 29 96.6 32 ............................T ATCGGTGCTGTTGCCGTGGTGTCTAACGCTAA 3807 29 96.6 32 ............................T ATAGCGTCCCAAAAGCCATAAGACAAAAGGCT 3868 29 100.0 32 ............................. ATGCTTAAGGGTTAATTATGTACGAATTAAGA 3929 29 96.6 32 ............................T AATCTGCTACTTTTGCTAAATCTTTTCCTTTA 3990 29 96.6 32 ............................T GTTCTGTTCTCCATTTCCTTTTCTGGCTTTAG 4051 29 100.0 32 ............................. AAAATAGGCTTATCGTATTCGTCCATTCTAAT 4112 29 100.0 32 ............................. TATTGTATCTACTCATGTTGACGACAGTGGTG 4173 29 100.0 32 ............................. TACTCAAAATCTTGCTTTGACCAAAGCTGTAA 4234 29 100.0 32 ............................. ATTTTTCTGCTTAATGTTACCTGCAGTTGATT 4295 29 100.0 32 ............................. TAATGACAGCAAAGACAAGTTTATTTATTGGC 4356 29 96.6 32 ............................T CATTTAGTCTCATAAGTGGCAACTGGCTGTCT 4417 29 96.6 32 ............................T TAATGGCGTTGGTAAATAATCTTTGTAGTAGG 4478 29 100.0 32 ............................. AATCTAGTTTATGATACAATAAACACAGATAT 4539 29 82.8 0 ...........A.....T......T.A.T | A [4560] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.3 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGACAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCAATCACCAAAAGAGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGCCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATTAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGAAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25500-26017 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQS01000065.1 Lactobacillus crispatus strain UMNLC2 Lcrispatus9C4S1518, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25500 29 96.6 32 ............................C ACGTACTTCAGTGAAGCCACAATCTAAATTGT 25561 29 100.0 32 ............................. GTCCCCGTTGGTTTCAAAACTCTCATTGCCTC 25622 29 96.6 32 ............................C ATCTTGCTACTTTAAAAAAGCAACTCAATTCT 25683 29 100.0 32 ............................. AGCAAATTAAGAAAAAACGTTCAGGAAGAGCA 25744 29 100.0 32 ............................. CAGTTAGGTTCTGAGATTGAACAAAAGATGGC 25805 29 100.0 32 ............................. ATGGGTGAAATCATCAAAAAAGGAGCTTAGAA 25866 29 96.6 32 ............................C ACTGTAATTGAAGATACAAAACTATCGTGGAA 25927 29 96.6 32 ........................C.... ATGCAGAGTGGCGTGCATGTCATGATTACAGG 25988 29 82.8 0 ..G..........A...........AA.A | C [26010] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAGGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATACTATGATATCTTCATCATAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //