Array 1 9288-11027 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUB02000035.1 Salmonella enterica subsp. enterica serovar Hadar strain HIY0249 NODE_35_length_39890_cov_9.178281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9288 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 9349 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 9410 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 9471 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 9532 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 9593 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 9654 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 9715 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 9776 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 9837 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 9898 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 9959 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 10020 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 10081 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 10142 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 10203 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 10264 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 10325 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 10387 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 10449 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 10510 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 10571 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 10632 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 10693 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 10754 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 10815 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 10876 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 10937 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 10998 29 100.0 0 ............................. | A [11025] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGAAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTTCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9189-7392 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUB02000108.1 Salmonella enterica subsp. enterica serovar Hadar strain HIY0249 NODE_108_length_14609_cov_8.172697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9188 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 9127 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 9066 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 9005 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 8944 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 8883 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 8822 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 8761 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 8700 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 8639 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8578 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8517 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 8456 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 8395 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 8334 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 8273 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 8212 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8151 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8090 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8029 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7968 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7907 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7846 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7785 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7724 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7663 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7602 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7541 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7480 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7419 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //