Array 1 927-113 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYF01000315.1 Acidithiobacillus caldus strain ZBY Contig315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 926 37 100.0 34 ..................................... GGGATTACTCGAAGCCAATCTGGAAAGCGCGAGT 855 37 100.0 34 ..................................... GCCTTCGGGTCGAATTTCCCCTTGTAGTACGTCC 784 37 100.0 34 ..................................... GGCGGCGTCTGCGGCGTCCCATGCGGCGTCCCAT 713 37 100.0 32 ..................................... GTAACGTGTGGAGTAGGTGTAATGCAGACTTT 644 37 100.0 34 ..................................... ACGTCGGCTCGGGTGTAGTCTTTCTTGGTGTGAG 573 37 100.0 33 ..................................... TGCAGCGCCTGTGATTCCGCGTAAGTGTTGTAT 503 37 100.0 35 ..................................... ACGGCTCGAATGTAACTTTTACTGGATTCCGTGGT 431 37 100.0 33 ..................................... AATACCGCAATGATTATGGGGGCAGCAGCAACT 361 37 100.0 33 ..................................... GCTTCGAGCCCATTGCTCTCTGTCCTATGGTCA 291 37 100.0 34 ..................................... TAGCTCAATGCCAGCCGATTCTATGGCATCGGCA 220 37 100.0 34 ..................................... CCCGTTGTGTGTCGCGATGTAATAGGCAAGCTGG 149 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 12 37 100.0 34 GTTCAATACATTGCCCTGATGAATAAGGGATTAAGAC # Left flank : GAGAAAACCCCATGCAAGTTCCTTGCCAATCGAGACCCGAGATTTTTTGGGAAACCCTCTCTCAATACATTGTTTTTACGGGTTCTTTTGGTGGGGGTG # Right flank : CCCACCCAGATGTACTTTCGTATTCCCAGGTATAGTTCAATACATTGCCCTGATCCTGAATCCGTGACCGCGGCACCGGAAAACTATTTCAACGCATTGTTTTATATTATATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATACATTGCCCTGATGAATAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 699-100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYF01000353.1 Acidithiobacillus caldus strain ZBY Contig353, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 698 37 100.0 33 ..................................... TGAGCAAGTGTCTGTTGAGGATGCAGAGTTTAT 628 37 100.0 33 ..................................... TTCAGCAAAAGCAAAAGCGGAATTTGAGGATAT 558 37 100.0 33 ..................................... AGCGGAGAACTTCAACTTGAACATTCCAGCCAA 488 37 100.0 33 ..................................... GGATCGCCTAATAGAATCAATGGGAAACGCACC 418 37 100.0 34 ..................................... CTACGTCTTTCTCGAAGGTCTTTTCAACGTACAG 347 37 100.0 34 ..................................... CTGCCTGGGTTCACTAAGTAACTTGGAAGATTAC 276 37 100.0 32 ..................................... ACAACAAAAACAAAAGTGGTGGAAGATCTTCT 207 37 97.3 34 ....................................G CAGGCTTTCTGGACACGAGCATGACCCTCTCGGA 136 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 9 37 99.7 33 GTCTTAATCCCTTATTCATCAGGGCAATGTATCGAAC # Left flank : CCAGCACGAGCACATCAATCTTGGCCAGGCGTTGGAGGAGCTTGGGATAGCGGCCGTCCGCATGGGCAATTTCAAGGTCGGCGAGCTGCCTGGGAAGGCGCTGGTAGAGCACATGATAGCCGTCCCGACAGGCCTGATGGCCCAGGGCACAGGCGATGTAGGTCTTGCCGACACCGGTGGGTCCCAGAACGAGCACATTCGCGCAAATAGGACAGGGCCGCGGCAAGGCCTGGGCGCTCGGCTTTGGCTCCCGATACCTTGTCCTCGAAGATTCGGCTACAGCCGGCTTTCTGGAGGGCGTCGGTCTGGAGCGCGGTGTCTTGCTCGGCGGTGGATACCCGCGCGTAGCCGATCCGGGCCATGGTGGCCTCCTTATGTCCAGTTTATCGTCCATTTATCTTTTCGTTCGGCAAACCGATTGTCAAGCTATTCTGGGACGCTTGCCTGGGCTGTCCATTAAAGGAACCAATGTTGGCCGGGAGGATAGAGGATGAAGTGTA # Right flank : CCACCCCCACCAAAAGAAGCCGTAAAAACAATGTATTGGGAGAGGGTTTCCCAAAAAATCTCGGGTCTCGATTGGCAAGGAACTTGCATGGGGTTTTCTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTATTCATCAGGGCAATGTATCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 2941-777 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYF01000236.1 Acidithiobacillus caldus strain ZBY Contig236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2940 29 100.0 32 ............................. GCTACGGCACGCCCACTCCGAACCGGCAGCGC 2879 29 100.0 32 ............................. AGCAGCCGGCTCCAACGGGTCGCCGGTCTCGG 2818 29 100.0 32 ............................. GGCTAATGAATGGGAGCGCGTCGAAGAGTGGC 2757 29 100.0 32 ............................. CATCCCACAGGGTATCCGGTGGCGCTGCCCGA 2696 29 100.0 32 ............................. CCGTGCAATGGATGCACGCGGAATTGACAGAG 2635 29 100.0 32 ............................. GAAGGCCAGGGTCTCGAGGTCTCCAAGGAAGG 2574 29 100.0 32 ............................. CCCGCGCCCGTGCATATCCTTAATCGGGAGAC 2513 29 100.0 32 ............................. GTCGTGGTTATCATGATATTTTCTCCTCCGTC 2452 29 100.0 32 ............................. ACTTCGAAATCAACCGTAGGCGATGCCTATGC 2391 29 100.0 32 ............................. CCACCGATGCGGAACTGGAAACCGCATGGGCC 2330 29 100.0 32 ............................. GAATGGTTTGAGGGTGACGTAGAGTTTGATAC 2269 29 100.0 32 ............................. AAATTATCAAGGATATATACTGGAATTATCCA 2208 29 100.0 32 ............................. GCAGGCCAAGGGCATCGAGGCAGGCCAAGGGC 2147 29 100.0 32 ............................. GTAGGGCTTACTGCGAGGGAGTTAGAACTCCG 2086 29 100.0 32 ............................. AAACTCCGGCACTGTTCTGGCACTACGCCACC 2025 29 100.0 32 ............................. TAGACAACATCGGCCCAATATTCCGATTTGTC 1964 29 100.0 32 ............................. CTCTCAGACCTTCACACCGTAGAGCATTATAA 1903 29 100.0 32 ............................. TCGCAGACGATGATTTTGTGCCCCGGCGCGGG 1842 29 100.0 32 ............................. ACCAGCCCCCGGCGGGCCGCCCGAATCTGCAC 1781 29 100.0 32 ............................. GCCGAGGAAGGCCCGGGTCTCGAGGTCACCAA 1720 29 100.0 32 ............................. CCAGCCGATTTTATCGCCTCACCAATGGCAGC 1659 29 100.0 32 ............................. ACTTCGCGCTGAGAGTCTGTCCGGACTTGGGG 1598 29 100.0 32 ............................. GTAAAACGGTCGGCCAGCAGGTTGTATTTAGG 1537 29 100.0 32 ............................. GCCATTACTGCAGCGGAATCCGGTCAGACTGC 1476 29 100.0 32 ............................. TCAAAAAAGAAAAGGCGCAAAGCATTATAAAA 1415 29 100.0 32 ............................. GTGATCTCGGAAAAAGTAGCGCAGGCGAAAGC 1354 29 100.0 32 ............................. TGTTGGACGAAGCCCAGAGCCGGGCCGTCGTC 1293 29 100.0 32 ............................. TGATGCAACGGTATCAGATGGCGGCGCAGAGC 1232 29 100.0 32 ............................. TCTAAGCAGAACGCGCCCCTGGATACATAGCC 1171 29 100.0 32 ............................. AAATCACAGGGCTCGAAATCCTCAGTCAGTCC 1110 29 100.0 32 ............................. TCGAACGGCAGTAGCGCATCAACAACGGATTC 1049 29 100.0 32 ............................. AGCCATGGGGCTAGGGCCGCAAGTACGCCGAA 988 29 100.0 32 ............................. TAACGGTGCAGTCTCCGGTGACTTCGGGAAGC 927 29 100.0 32 ............................. AAATCGTCACAGATCCGCCCTCACGGACCGAT 866 29 100.0 32 ............................. ATGTGCTCGGAAGCCGCTTCGTAGGTACAAAA 805 29 79.3 0 .........TT.......C..GC..C... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.4 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GGATGCCGTTCCTCCAGCCATTCCAGAACCTAAGGGACTGGGCGACGCCGGACACAGAGGCGGCTAACCATGGCTTTGCTGGTCGTCGTGACTGAAGTCGTTCCACAGCGATTACGGGGAAGATTGGCGGTATGGCTGCTGGAGATCCGCGCCGGGGTTTATGTGGGCGACGTCTCACGTCGGGTACGGGAAATGATTTGGGAACAGTGTGAAGCGCTGAAGGAAGACGGCAATATTGTTATGGCTTGGCAGGCCAACACCGAGTCCGGGTTCGACTTCCAAACTATCGGGAAAAACCGGCGTATTCCCGTCGATCACGAAGGGTTGCGTCTAGTGAAATTCCTTCCCGTGGAGGAAGAAAGTGGATCGTGAAGTCGCTCTTTAACAATCTGAAAACAGGCTATTTTCATGGCCAACCACGCGCATCCCATGCAGGCAAGAATGCTGGTGGGAAATCGTATCCCGGTTTTCGCAAATGATATCAATCAACTATGATTGGT # Right flank : CGCTCTGGCGAGATGCTCATCCGTTACAGCCTAACGGTGGAGACGGAGAGGGCGCGGGTGATGCCCTGCCCGCCCCGGCATCTATCGGTGATGACGCTTCCGCCTGCGAGGCTTTAGCTCGATCAGTTCTTGCCTCCGGTCATATTTCCAGAGGCTGTAGGCAAACCAAATAGCCCCCACCTTCACGACGGCACCGAAACTAGCAAATCCTCAGGACAGGATGCTGACGATTTTACCGTGCGTCATGGGCCACCTACTTTGGCCTCTGAAAACAGCCGGATTTCGCTCCCGAGGATATACCCTACCACCTCAGCCCCTTAAGTCGCTTCTGGGGGTGTTTTTTGCCGTTTAGGGGGAATCGGCATCGCAGCGCTTGCGCCGCTTCCGCCGCCATTTCTCTTCCTGCTCTCGGTCGTACTTCCAGAGGCCGTAGGAGAACCACAAGGCGCCGACCGTAATCAGGACACCAAAACCGTCCAGAGCCCACATCACCTCGGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 672-506 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYF01000354.1 Acidithiobacillus caldus strain ZBY Contig354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 671 30 100.0 39 .............................. ACCGTACCGAGCCGTCTTGGTGCGGTCGTACCGCATCTC 602 30 100.0 37 .............................. GAATCCTTGATCGCCATAGCCCGCGCTGCCGGATCTC 535 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 100.0 38 AATCCCCTTCAGAAACGGGGTAAGTAAAAC # Left flank : CGATGGGGTCATGCGTGGCCACATGGACCGGATGCGCGCCATGCTGCGGACTGGAAGCCCGCCAAGCGACGGCAGAAGGATGTAGATGCCCGATGGACCAAGAAGCATGGTAAATCCCATCACGGCTACAAATTCACGGTGAGCGTGGACCGTAAGCACAAATTCATTCGCACTTGGGTGCCCGACACGGCGGGTGTGTCACGATTCCCAGCATCTGGAAGCCGCGCTCGATGAGTGGAACACCAGCGCCGAGATCTATGCGGACAAAGGCTATGTCGGTGCCGAACGGGAGGAACGCCTTCGGGAGTGGCCACTGTTGGCCTGCTCCTCCACCGTCGCCCGCCAGTGGTCCACTCTGCGCGGGCGCACTTCCTTTCCCTGATCCATGATCTAGCTCCAAGAAATTCGTCGGAACCGATAGCCTGGCGAAAGGCTAGGACAAGGAAAAGAACGCCGTGTGGCGACCGCTTACGCAATTATCGCCAAAGGTTGTATGTCTT # Right flank : AGTATCCACTGGAAAGCCCGCCAGTCAAGGGCTCCAGGAACCATATGCGGACATGGGGCGCAAAAATATGTAAATTTGAACAAATCTACATGGAATCCGTCTAGAAAACAGGCAAAACTCTTTGCAAAACAATAGGCGGACAGAAAAATCTCGAGTATTTTCTTATTACCATAAGAATCAATGAGTTGCAGGGTTATTCCCATTTCGCTATAAAATGAGGACTGTTGCTCCGCAGCCACAATAAGCCGATAGAGACTGGTTGTAAAACAACCAACAATTCCTTTAGGGAACCTCTGCACTGGTGTAAAATTCTCGTGATTTGGGGCGAGTTTGTCTCGCCAAATCGATTTGGCGACGAAAATTCTCATTTTCCCTTCCCAGAGACGCGAAAGAGCGCATGGTGAGCACGGAAATCGCCCGCTTTCCGTCTTGGTGACGGATTATGCCCGTAACCAACAGAGCTCCTTACGAACCAGATAGAGGTTCACCAGGGCAAACAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCTTCAGAAACGGGGTAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1808-824 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYF01000077.1 Acidithiobacillus caldus strain ZBY Contig077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 1807 35 100.0 32 ................................... TGAGCGGGGATGTCGAGGATTTCGAGGATACC 1740 35 100.0 32 ................................... TAGTAACACCGTCCTTGCTGCCAGGTACGAAG 1673 35 100.0 32 ................................... CCCAACGGTGCCCGGGGCCACTTTCAGACGCT 1606 35 100.0 34 ................................... ATGTTGCTCCTGTTGCCTGGCGTGAGCCTGGGCA 1537 35 100.0 34 ................................... ATGGGCAGCATACGCTACGGCGCTGCTTCAAGCC 1468 35 100.0 33 ................................... AGGTTGTGCCAATCGGTCACTTCCTCATAGTTG 1400 35 100.0 33 ................................... TTTTCAGTAGTCTCGGAGTTTGTGCTTTTGCCC 1332 35 100.0 32 ................................... TTGCGGGAATTTACTCCCAATCCTCGTCACGG 1265 35 100.0 33 ................................... ATTTTGGAAAGCGGTATACGGAAGCGCTCATCG 1197 35 100.0 33 ................................... TATTATCATGTGCTTTAGTGAAAGGCGAATAGG 1129 35 100.0 33 ................................... ACTAGCCGCAGATCAGATCGAGCCGCCTGTTGA 1061 35 100.0 32 ................................... CCATCGGTGCGGCGAGCGGCCTCGCGAATAAT 994 35 100.0 32 ................................... ACGATGTTCTCGCCCTCGGTCAGGGCGTTTTC 927 35 100.0 34 ................................... CAACGACTTTTGCAGCATCGGTAGCGGCGCTGGA 858 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 15 35 100.0 33 GTTTTACTTACCCCGTTTCTGAAGGGGATTGAGAC # Left flank : TTTTGCTTGGCTGGGGTGAGCGAGTACAAAAAAGCGTTTACGAATGTCGGATCGATACCCCAAGTCAATGGCTGGCGCTACGAGAAAAAGTGGCCAAGCATCTGGACGTGGAAACGGATACCGTACGCTATTACAGTCTCTGCGATGCAGATCGAGTAGAAATAAGCACCGATGGCTATCAAGAATATCGTGAAGAGTCCGATTTTTACTTACTCTAAAGCAAATTTTGGTTGTTTTACAACCAGTCTCTATCGGCTTATTGTTGCTGCGGAGCAACATTCCTCATTTTATAGCGAAATGGGAATAACCCTGCAACGCATTGATTCTTATGGTAATAAGAAAATACTCGAGATTTTTCTGTCCGCCTATTGTTTTGCAAAGAGTTTTGCCTGTTTTCTAGACGGATTCCATGTAGATTTGTTCAAATTTACATATTTTTGCACCCCATGTCCGCATATGGTTCCTGGAGCCCTTGCCTGGCGGTCTTTCCAGTGGATACT # Right flank : TTTCCCGTGATCCTCGGGGGTACGCCGCACGAGTTTTACTTACCCCGTGTCACTGGCCGGCAGAATAGCGCCACCGATGGTCGGCGTAATGGCGCCACTGAAAAGTGTCGAGATCGGGGTCTCGAACGGGGTCAAGATTGGGCGATTTTTGCCCCTTTCGCAACCGGCTTCTTGGGCACCTCGGGCAGGGGTCGGGGAGCACGGTAACTCTCGCCTTCCAGGATGAGTCGATAGGCGCCGTGGCGGAGCCGATCGATGGTGGCCACGCCCAGCATCCGGTTGGCCGGGAAGACATCTCCCCATTCGCTGAAATCCAGATTGCTGGTCACCATAGTAGTCGCCTGCTCGTACCGGGCACCGATGAGGTCGTGGATGTCCTCGTCGTGGGGCGGTCGCAGGGGCTTGAGGCCGAAGTCGTCGATGATGAGCAGGGAGACCTTGGCCAGTTGGCGGAAGACTCGGTCGTAAGTACCGGTGGCTCTGGCGGCGTGGAGAGCTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTTACCCCGTTTCTGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5204-5716 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYF01000373.1 Acidithiobacillus caldus strain ZBY Contig373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5204 28 100.0 33 ............................ TTCTGGACGTTCAAGAATGCAGCATCGGCTTTA 5265 28 100.0 33 ............................ CCGGCAACGGCCTACCCACGCAATATCGTCGAT 5326 28 100.0 33 ............................ TTTCATCAATGCCTGGGCAGGTGCCGCGGCGGC 5387 28 96.4 33 ...........................A GGGCATACAGGTCGCGAGATTCAGCGACAGGAA 5448 27 78.6 33 ..-.....T....CG........G..T. TTCGTCATGCACAAAGTTGACCACCATGTCTTG 5508 28 89.3 33 ....C........CG............. CGAGGTGTTTGAGGCGCTCAAGGGCGGTGTCGT 5569 28 85.7 31 ............CCG..........C.. TTGCAATCTGCATTTCGCATTTGCCCGCGGT 5628 28 85.7 33 ...A.........AG........G.... CGATTGCGCCGCGACGTGCAATCCCAGCTCTTT 5689 28 75.0 0 .G...........CG.......G.TT.G | ========== ====== ====== ====== ============================ ================================= ================== 9 28 90.1 33 GTCGTCCCCGCGTGTGCGGGGGAAAACC # Left flank : CTTCGGTGGACGAGCGGGATTTCCTGTTCGCGCCGTACAGGGACGCCATCGTGTTCCGGTCCCGCTCGGAGCCCTTGCCGGCCACGCCGGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGAAGGTCGAGTCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCAGTCCTACCGGAGCGGCATCGGACGGTACAAGGCTTTTGGGTGCGGGATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGCCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGA # Right flank : GCACCGAAATCGGTGTTTTTTGTTCGTTTGATAAGAGGAGACACGATATGTCGATGTTGGAAACTTTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGAGCGGCGTTTTCGTCGGACGACAAGGGGGCACCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGCTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGAGCCATACGGGTGGTGCAGGAAGCCCTGAAGGCGCAGGGGAAAAGCTTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAGCGGAAAAAGGACAAGGTAACCCTCCCAGGCCGGAGTAACGGCAAAATGAAAGCCAAGGACGTCCTACGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGTCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCTTTCCCGCTGCCCAACGCGCAGGGG # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 6778-7232 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYF01000373.1 Acidithiobacillus caldus strain ZBY Contig373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================ ================== 6778 28 100.0 33 ............................ GGTCGGTTCTACTCGCCCGTGGGGGAAAAAACC 6839 28 100.0 33 ............................ GACTACAACCCAGATCTCCGAGTACGCATATTA 6900 28 100.0 33 ............................ ATGACCTGCTCCTAACCGTGGCGGAAATGACGG 6961 28 100.0 33 ............................ GCAAACAGCACGGGACAAGTGGATCGCCCTTTG 7022 28 100.0 33 ............................ TGAAGACCGACGGGCGGCGGCTTCCGCCCCACT 7083 28 100.0 96 ............................ TGGTCAAAAGTTCTTGGACGACCAAGCCGAGATATCTTCCCTGCGCTGGCGGGGAGAACCCCCCAGAAGAAATCGGGTTTATACTGGCTCTCGTGA 7207 26 85.7 0 ..-...........T........-...C | ========== ====== ====== ====== ============================ ================================================================================================ ================== 7 28 98.0 44 GTCGTCCCCGCGTGCGCGGGGGAGAACT # Left flank : CTTGACCAAGGACGAGGCGGAAGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACGGGCCTGAAGCACATCAACGATCGCCCCTGGGAAGAGATCGTGGCCGGTGTGGAGTGCGAATGGGGCTACCAGATCCATCGGTTTACGCCCTTCCAGTCCGGCGCGGTGCTGGCTGGTCTGCGCTACTTCGCCGGCGATCCGGTCATCGGCGCGCACAATGCGGTCGGGCGTGGTGAGCTGGCGCTGGATCTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGACCCCAAAGCGAGGAAGCCGGCACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGCCTGCTGGCCGAACATCTATCCGAATTCGACCGGCTGGCGAAAGCGGGCTTTCCGGGAATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGTGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGATAGA # Right flank : CGCGGCAACCGTATCCTGAAACCAATCATTTTGTAGCTAATTATGGAGGAACTTGATGAAAAATATCATGCTGTCGCTACTGCCTGCCCTGTTTCTTTCGGTCTGCGCTGCGGAGGCTTTGGGGGCTAATGCCAACGTTGACGAAACGCCTGCGGTTACGGCTTACGCGACGAAGGTCAGCAAGATTTTGGCCCCACTCACGCAAAATGAGGAAGAAGTCGTGGAACGGCAGGTCATAAGAGTCCTCGGGCATCCTTTGCCAGCTAAAACTGGATTGTGTATGGCGAAAATCGATGTGAGACCGAATGGTTCTGTTGCCCATTTCACCATAATGCAATGCCATGGAGACGTTTTGGGCTCGGCCCTTTCACAAGCTATCGAATTGGCATCTTTGCCACCCACACCTTTTCATCACCAGGTAAGCATTTTTGTCGGTGTGGACTGCGGGGATACCATGCGTCCCATCAGTTGACTTCTGTGAGATCCACGATGGCCAGCGA # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //