Array 1 594479-594906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007633.1 Thermotoga sp. RQ7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 594479 30 90.0 35 C................A...G........ TTGACATTGTCAAAAGAACGTGGCACTAAACAACG T [594484] 594545 30 100.0 36 .............................. CGTGCACCTTCTTTGAGAAGTTCAGTGGGATCTTTT 594611 30 100.0 36 .............................. GGAACTGTTAGATGGCTGGGATATGAAGATCAAAAA 594677 30 100.0 37 .............................. CTTATTTCGGTGGTCGAACGGAAGCGTGGTTCTTAGG 594744 30 100.0 37 .............................. TTGTTGAATGTTTGATTTATTGCTTCCATTACAGCGT 594811 30 100.0 36 .............................. GTACAACAGAGGCACTGGTTCACCGTTGAACAAAGC 594877 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : ATCTCTTTCACAATTTCGGATATGCGTTTTCCTGTCTTTATTTCCAGTCCCTTTGAGAGATTCAGAACCATCGAAGGTTTTTTCGAAAGCCTGGAAAGATGTTCCCTTACGTGCTGCACAGGAATCGCTATCACGAGTATGTCGGTGCTTTTCAGTTCGTCGAGATTGTTCGTCGCTCTGACAGAGATTTCCATTTCATCTATGTAAGGACTGGTGTGGGAATTGTTTATAAGATCTGCGATTTCCTTTCTTCTTGCCCACAGAATCACTTCTTCTCCGTTTTCCTTTAAAAGTTGAGCAAAGACTGTCCCCCAACTTCCAGCCCCGAGAACGAAAAATCTCATCTTTCAGCCTCCCTGAACACTTTCTATCTGGAATTTTAACAGATTGAAGTATTGAAACAGGATATCCCATACAGGGAGCAACACAAGGAGGGTATCGAAACATGGATTTGCAGTATGCGTGGGAAGGATTTTCATATCTCTTTGGAGCAACAAAAT # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAAAGCATTTCAAAAAGCAAGAATATATGAGGACATACAGAAGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGATCAAGTCAAGTACTGTTTGGAAAAATGGAATAATTACATAGTCAATAGAAAGCCTAAAGAAAGGCAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGGCATTTTGAGTTGTTTTATGGGAAAATCTACTAGTTCTCATTTTCACAAATTTGTTTAAAAAGGTACTCCTTAAAAGGTTAGAGACTAAGTACGTGGTTTCTTTATTCATGATAGATACACGATAGAATATGAAGAAATATTCTCATACCCTGTTTCACATTCTCGCTCATTATTCCATTTTCCATGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCTGCATCGCACATCAGGAGTCAGTTACAATCACCACCCACTTTGTGAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 2 975396-975171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007633.1 Thermotoga sp. RQ7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 975395 25 88.0 41 ........TG....T.......... TGCTAATTGTAAAAGAGAAGCCTGGCTCATGGCTCAATTTC 975329 25 96.0 43 ........T................ GCAACCTGTTGATCTCAGTATCACCCTTCAGTCTTTTTGTTTC 975261 25 100.0 41 ......................... CTTGTGTTCAAGGGGTGGAACATGAAAGAGATAGAAGTTTC 975195 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 4 25 96.0 42 CATACCTCAAAGGAAGTATTGAAAC # Left flank : CCTTTTCTGCCCTTGTTAAAACAGCGCTTCCCATGATTTTAAAGGTCACCGTTTTGGATGTTATGATCTTTGGAACAGGAAGATCCACACCTGCAACCTTCAATCCGTTCATGATTGAATCCTGCGAAACGATGTAGTTATATAAATAACCCACCATCTGGGGAATAGAGGAAGAAAAATTAAAAAAAATAGGAGACTCAAAGATTATCGAGTCTCCGGAGATATCTTTTATTTTGTTGAAACCAACACTGAAGACATAGGGTTTTGGTATTCGATCGTGAGAATTAACAATTTCTTCAAACGGTGTACGCTTATACACTTGCTTCAATAGAGACATAAAGATTCTTCTGTAATCAGCAGGAAATTTACCCTCAGAACCACTTTCGGGCTGGATTTTAACGAATATTCTCATATTCAATCCCCCTGCCTCCCCCGGTACAACAGGATTAGGGATGAGGATGTTTTGAGGTCAGAGCACAGGATACTTTTGGTGGGTAAAT # Right flank : CCGTTGGATTTCAGAGAAATTATACCACAAAGCATTTCAAAAAGCAAGAATATATGAGGACATACAGAAGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGATCAAGTCAAGTACTGTTTGGAAAAATGGAATAATTACATAGTCAATAGAAAGCCTAAAGAAAGGCAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGGCATTTTGAGTTGTTTTATGGGAAAATCAACTAGTTCTCATTTTCACAAATTTGTTCAAAAAGGCACTCCTTAAAAGGTTAGAGACTAAGTGTGTGGTTTCTTTATTTGTGCCAGATATATGAACACAGATGAAGACATATTCACAGATCTTTTTTCACTTTCTCACTTACTATTCCTTTTTCCATGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCTGCATCGCACATCAGGAGCCAGTTACAATCACCACCCACCTTGTGAAC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATACCTCAAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 3 983576-986935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007633.1 Thermotoga sp. RQ7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 983576 29 100.0 36 ............................. AACCTGCTCTTTAGAGATGCCGACAGCATCAGCAAT 983641 29 100.0 37 ............................. TGCTTCGTACAGTTCATCGTAGCTCTTGAACGACCTT 983707 29 100.0 36 ............................. GAGGGCGTTCGACGATGTGAGCAGTGCCCTCTCGAA 983772 29 100.0 37 ............................. TAGACCTGTTCGACAAGTACGTGGCGTTCCCTGAGGA 983838 29 100.0 37 ............................. CAGACAAGGCAAAGTACTTTGCAGGAGAGGCGTTCAG 983904 29 100.0 36 ............................. CCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCC 983969 29 100.0 36 ............................. CCTCCTCTAAGTTTTCCTAGGGATTACTTTTCCTCC 984034 29 100.0 37 ............................. CGGGACTGGGACGAGTCCCAGAAACTGCCCACGCCGT 984100 29 100.0 36 ............................. TTCATCCTTAATCCTCATTAACTCCTCCCTGAATTC 984165 29 100.0 36 ............................. CCCTTAAATTCGCCAGGCAGAGCAAGTATAAAATAA 984230 29 100.0 36 ............................. GTTTGTGATTAAAATTGAAACAAGCGGCGTCTACAT 984295 29 100.0 36 ............................. GCCTAGAACACACCGTTTTTTCGCCAACGCCCCCCA 984360 29 100.0 36 ............................. GCCGACAGAAGGCGTCGTTTTCAAACTGCGACACAA 984425 29 100.0 36 ............................. TGTACTTGGGATCAACGCCGTAGCGTGGATCCCTGA 984490 29 100.0 36 ............................. ATAGATTTAAACGTGTAATCGATCACGCCTTTTAAC 984555 29 100.0 37 ............................. TCTTCTGTGAACGTCACAAATGCATCCCCGACACTAG 984621 29 100.0 38 ............................. GCCCTAGTTCGTGAGCTTCTTTCTTTGCCTCTTTGATT 984688 29 100.0 35 ............................. CACGGTCCCAAACCTGATCTCGACGAGATCTACGA 984752 29 100.0 38 ............................. ACTAACATACTCTCGCCTCCTCTAATTCGTTCTTTTCC 984819 29 100.0 36 ............................. TCGATAACATAATTCATTCCTTTGTTTTCAATCCTC 984884 29 100.0 36 ............................. TACAATTTCATCTTAAATCCCTCCTTCCATCTTTAT 984949 29 100.0 36 ............................. GTGATCAAGATGCAGCAAGACACCACACAGTTTGTA 985014 29 100.0 36 ............................. GCGCACAATTGCAGGCAGTTTAGACAGCAGAGGCGC 985079 29 100.0 36 ............................. AAGCGCAAACACGCTGAAAGTGGTGTCGCCTATCTG 985144 29 100.0 36 ............................. CAGTGTTTTATACAACAGAACACCGGTTTGTGATTA 985209 29 100.0 37 ............................. AAATATAAGCTGGTCGTCGTTCGTGAACAGCTGCCAC 985275 29 100.0 36 ............................. ATCTCGACGAGATCTACGACGCATCAAAATATTACA 985340 29 100.0 36 ............................. CACAATCTCATCCCCTTTCTTCAGACTCAGCAGAAT 985405 29 100.0 35 ............................. GGTTCGAGCGTGAAAGGGAACTCAATCCTCATCAA 985469 29 100.0 35 ............................. GCGTCATTGATATCTCCTCCGATGGCGGGAGCTGC 985533 29 100.0 37 ............................. CCTCCTTCAACTCGAGTTCATCACCGTACTTTTCCAC 985599 29 100.0 35 ............................. CAAATGCTCTTGGAATCAAAGCTATCGAAGTCGGA 985663 29 100.0 37 ............................. ACCAAATCGTCGAGGACATCCTTGTGAACAGGCTCGG 985729 29 100.0 37 ............................. GCACAAATAGTCAACCTGTTCAAAGGGGTGTCTTCAA 985795 29 100.0 36 ............................. TCCTCGTTTAGCGTTGCAAGAGATAGTCCTGTGGGG 985860 29 100.0 35 ............................. CAAAAAGATGACGCTCTCGGCAATATCTTTCCGTG 985924 29 100.0 36 ............................. TGATAAACCATCAGCGGCTCCCTGACCGCCATCCTG 985989 29 100.0 36 ............................. ATTTTCTGGGAAATGCAAGAAATTCCAGAAGAACTT 986054 29 100.0 36 ............................. TTCACTGTGGCAGAGATGGCGCAGCAGGACGCAGAC 986119 29 100.0 38 ............................. AATGACGGCCGGCACAATCTATGCAATGGCGGCAGCAG 986186 29 100.0 36 ............................. CAGGTTTGTCTGTGCGGTCTTCCGTGTAGAAGAAGA 986251 29 100.0 36 ............................. GCCTGTTTCGAGTGCGGCTTGTGCAAGTGCAAGACG 986316 29 100.0 36 ............................. AGGTGCATATTGAAAATCTATAACAGTATCGTCATA 986381 29 100.0 37 ............................. TCGTATCACCTCAAAAAGGAGGGGGGGGAGGAGCCCC 986447 29 100.0 37 ............................. TCCCTGTATCGTCTGCTCGATAGGGTTGCCTTGTTCG 986513 29 100.0 36 ............................. TGTCTTCTCTCCTATCCGCCTGCCGTTTTTGGGAAT 986578 29 100.0 38 ............................. TGCTATCACTTCCTTACCTCTGTATCTCGTACTCGATC 986645 29 100.0 37 ............................. CTTGAGAAGGCTGCTGCACAGGCTGACGCATGGATCG 986711 29 100.0 36 ............................. ATGGTCGGGTCATTCCCCTCCTTGTCTCTGAACAAC 986776 29 100.0 36 ............................. CAGAACTCCTTCCACCTGTTCACCGCTGCTTTGAAC 986841 29 100.0 36 ............................. TGCGGTGTGATAGGTCACACTCCCACCTCACACAAC 986906 29 93.1 0 ..........................T.G | A [986931] ========== ====== ====== ====== ============================= ====================================== ================== 52 29 99.9 36 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : GCTTCAACAAACCATTCTTCACAGGAAATTGAAAAGGAAAATTAAATATCAATCTCTCATAAGGCTAGAAGCATACAAAATCATAAAGCATTTGCTTGGAGAGGATGAATACAGGCCTCTTAAAGTGTGGTGGTGATAGTGGTAAAGGTTATACTGGTCTATGACATTTCAACAGAGACCAAGGAAGGTGTTAAGCGTTTAAACAAGGTGAGAAAAATTGCCAGGAGGTATCTTGACCATATACAGAAATCTGTCTTTGAAGGTGAACTGACAGAAGGAGAGGTCGAGAAATTGAAATTCGAATTATCATGTGTTATAGATAAGAACGAAGATTTCGTAATAATCTATAAAATGCCGCCTTCCATTATGATGGAAAGAGACTTTCTAACGAATACAGAGGATCCCTCCTCGAATTTCATCTAGACAAAACTGGAGGTTTGACGCAAAATCTGTTCAAAAGAATGGTTGTTTCATGCTTTTTTACTAAGAAAATAACTGCG # Right flank : GAATGGTGGAAAAATGCCAACTGTTACTCTATTCCTCACAAACAGCATACTAAAGCAATATTTTCTGGTTCATCGTTTTTGAAGATCCAGAAAGACCGATCGGAAGTTCGGAAAAAAAGAATATAAGGGAAAGATTCATAGAAATGCTCAAAACCTATGGGCTGGGTGCGAAGACGAATTATGGATATGGCCGATTCGATGATATTTTATGATAAGATTTAAAGAAATTGTGATACAATCTCAGGTAAGGATTCCGAACTTTTTGAGATCTCGAAGAGAACGTGCCACGAGCCTGGAAGGCTCTGGCCGTTCTTTTTTTTAGGTGGGGGGAACATGAAAAACGGACGCTTCGAGTTCTTGAAGAGGGTCTTGGGTTCCATTCAGAGTATTCGAGGGTTTGTCCTTTTTGAAAGTGTGGGCGGAGAACTTTCTGTGAAGACGTCGGTTGGGAAGGTGCCCCTCTTTTTCAAAGAAGGTTTTTCTTTCACAACGGATGAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 1012013-1011390 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007633.1 Thermotoga sp. RQ7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1012012 30 100.0 35 .............................. CGGCAGCAAACCTCAAAGCGCTCGAAAGAAAGGGG 1011947 30 100.0 36 .............................. CGATGTCTGCGTGCTCTAACCATTTGTACAATTCTT 1011881 30 100.0 36 .............................. CAATATCCGCAAAGACGAGGAAGTTTGGATCGAACC 1011815 30 100.0 35 .............................. ACTGCCTCTCTTAAACGACGAAATGCGGAAGAGAG 1011750 30 100.0 36 .............................. AGAGGAGATACATCGCAGAGGAAACAAAGAGAAAGA 1011684 30 100.0 36 .............................. TCGCCTTCCCATACGAGGGTCTGTACGTCGCCCTGG 1011618 30 100.0 36 .............................. TAGCCACGGCGAATGCTTTGTCGTGGCGGGTGAGGT 1011552 30 100.0 36 .............................. TGAAGTACGCCATTTACACGAACCCTAAGGGCGGAT 1011486 30 100.0 37 .............................. ATAAACTCGGCACTTCGAGCATAGACGAGAACTTCGA 1011419 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 GTTTCCATACCTCAAAGGAAGTATTGAAAC # Left flank : CGTCTGACATGCGACCATGCAATTGTAAGGACGTGCTACTATCACTTTCCCTTCTTTTCTGTCAAAGTCAAATACTCGCCTTCCACAAGTTACAAAGCAAATACCACACGTTGCACATTTATCGTAGTTGATGACTGGATACCACTCTATTGCTTTTCTATCTACACCCCACCAGGGAATTTTAGAAAGATCACGAATCTCCCGCCCAAGGGCATCCTTTCCAATCACCGGAGTGTTCTTAGATTCCATTCCAATCTCCCTCCCAATCCTGTTTTTTATCTTTTTGCAATAGGGAGGGAGTGTTAATAACCACACCACCAGCACCAGCACACTTTTCTCATAGCTTTCACCTCGAGGAAATTATATACTTTTTACATATATTTGTCAAATAAAAATAAAAAATAGAAGCTTTCCAGCCTGAAAAATCGCTGCGGGTTTGTACCTATAAGGAAATATTGAAACTTTCTCATCAAAAAGTTCTTTCGCCTGCCAGAACACTC # Right flank : CCGTTGGATTTCAGAGAAATTATACCACAAAGCATTTCAAAAAGCAAGAGTATATGAGAACATACAAAGGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGATCCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAAGAAAGACAAAATCAAAAGATAAATTATTCTAACCTAGGTCGGGCCATTTTGGGGTGTTTCAGGGGGAAACCGTCTAGTTCCTGTTTTCACAAGTTTGTTCAAAAAGGTTCTCCTTAAAAGGTTAGAGGCTAAGTGTGCGGTTTCTTTATTCATGATAGATACATGAACACAGATGAAGACATATTCACAGATCTTTTTTTCGCTTTCTCACTCACAATTCCATTTTCCCTGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCTGTATCACACATCCAATGCCAGTTACAATCACCACCCACCTTGTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCAAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 5 1090661-1090292 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007633.1 Thermotoga sp. RQ7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1090660 30 100.0 37 .............................. TGAAGTTCTCCGAGTTCTTCAACTCAGGTGTGCCGCT 1090593 30 100.0 39 .............................. GCTTCTTCACGGGAACGTCAAAGTACACACGCTTTCTGC 1090524 30 100.0 40 .............................. CAGGTGCGAACCCTGAAAATTTACGAGGTTCGAACTTGTT 1090454 30 100.0 37 .............................. CTACACGCTGTCTGGCCTTCCGGCGGGAGACCTCACA 1090387 30 100.0 36 .............................. TTCTTGAGGATCTCGATTCGATCCACGTAGAATGTG 1090321 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 100.0 38 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : GGAGATCTACGCCACGATCGTCAAAATAAGGAAGATTTTGAAACTCTACGATGTGGACAGTGCGGATGGTATCTTCAGGTCGAGTGATGGTAGTTTCAAAGGATACATCAGTCTGCCCGACCGATATCTTTCCAAAAAGGAGATAAAGAAACTCGCAGCGATCTCTCCGAACACGACTGTGAACATCATAAAGAACAGTTCCGTTGTGGAAAAGTACAGAATAAAACTGCCACCCACCATATACGGTTTTGAAGAACTGCGGTGCAAAAACGAAAACTGCATCACAAATCCTGCACACGGTGAGAACGTGTCTCCCTCATTTGTGAGAGATGAAAACGGCCGATTCATCTGTGAGTACTGTGAAACTCCCCACTCGTTCGAAGAGATATGGAGCATTTGATCTTTTTAAAAAGCAATCAAAGCGGGGATCTTTCCCCGCTTTTTGTTTTTTGTTTCCGTATCTTGTTTTTCTTTGAGTCTGTACCTCGTTTCTATACTTA # Right flank : CCGTTGGATTTCAAAGAAATTATACCACAAAGCATATCAAAAAGCAAGAGTATATGAGGACATACAGAAGGTGTTTCATCACAGGTGATTCTAACACACAGAAAGACCCAGTCAAGTACTGTTTGGAAAAATGGAATAAGGGAGCCTAGGTCAGGCCATTTTGAGGTGTTTTATGGGAAAATCAACTAGTTCCTGTTTTCACAAGTTTGTTTAAAAAGGTACTCCTTAAAAGGTTTGAGGCTAAGTGTGCAGTTTCTTTATTCATGATAGATACATGATAGAATATGAAGAAATATTCTCATGCCCTGTTTCACATTCTCGCTCATTATTCCATCTTCCATGCACACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCCGTACACTTCTTCCCATGCCAGTTACAACCACCCCCCACTTTGTGAATAAATGGAACTTACCCTGGTTTAGTAAATAAAATTATGTTGTTGTACACTTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 6 1233629-1233857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007633.1 Thermotoga sp. RQ7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1233629 30 100.0 36 .............................. ATGTCCTGACCTTCTTCAACCTGCCTTTTGATATCG 1233695 30 100.0 36 .............................. GTTCATCACGAAGGTGTACACTTACCTGATCATGCA 1233761 30 100.0 37 .............................. CTTTATCAGATGATCAAAAGGCTTGAAAAGGAGGATG 1233828 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 40 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TACGAATGCTCTATGAGATCTTCTCTATCCAGAAACCTCTCCAGTTCTCTGGAAAAGAGTTCGCAGTCTCTCACACTCACGTATCCCACCGGGTTGTCTATAACGACCCTGAGGACCCAGCCTCTGCTTTCTCTTCTGTACTGTATGTCGAAGATTTCCAGGCCTTGCTTTTCAGCAATTCTTTCCGCTTCTTTTCTAACCTTTTCTACAATCATCTCTTCGAACATACTATCAACCACCCCCTAGTGAACGAAAAACCGGGACACAAAGTCCCGGCCTTTCTCTGGCGGAGAGGGTGGGATTTGAACCCACGGGTGGCTTTTGGCCACCACACGCTCTCCAGGCGTGCGCCTTAGACCCCTCGGCCACCTCTCCTCTCCGTACCAAGAAAGTATTATACACTTGTTTTTTCAATAATTCAAGAGGAGCGTGTTTGTTTTTTTAATTTCATGCATTTGAAAGGAGAACCGAACAGAAAGATTGAAAAATTTCTATACTTT # Right flank : CCCGTTGGATTTCAAAGAAATTATACCACAAAGCATTTCAAAAAGCAAGAGTACATGAGGACATACAGAGAGTGTTTCATCACAGGTGATTCTAACACACAGAAAGACCCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAACCTAAAGAAAGACAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGCCATTTTGAGGTGTTTTATGTGAAAATCAACTAGTTCCCGTTTTCACAAATTTACTCAAAAAGGTACTCCTTAAAAGGTTAGAGACTAAGTATATGGTTTCTTTATTTGTGCCAGATACATGAACACAGATGAAGACATATTCTCATATCCTATTTCATATTCTCGCTCACTATTCCATTTTCCATGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCCACATCCTTCTTCTCATGCCCGTTACAATCACCACCCGCTTTGTGAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 7 1423489-1422791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007633.1 Thermotoga sp. RQ7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1423488 30 100.0 35 .............................. GAATACGACGACCTCCTGATACTCTGGTATATTCA 1423423 30 100.0 36 .............................. TGTGTGCTCCTTCTATCGTTGCCTGTGCGATGTAGG 1423357 30 100.0 38 .............................. CAAGAACCTCAAGAAGATTGTGGTGAATGCAATTATTG 1423289 30 100.0 36 .............................. ACTGAATAATTCTTTCGTCTCCATCAAAATCCTTTA 1423223 30 100.0 37 .............................. TGGTGAAGGTTGAGTTTGTGAAGGAGATCAGAAATGG 1423156 30 100.0 36 .............................. GTTTTCAGTCCGGATGGTCGACGTCTTTGGCGGTCA 1423090 30 100.0 40 .............................. TAAATTTGCATATGCGTCTTAACAATTCTAGCATCGAGAT 1423020 30 100.0 37 .............................. ATTTTGATCTTGAAATACTGAAATTTCTGAATGTCTC 1422953 30 100.0 36 .............................. TTGACAAAGAGCTCTGGGAAAAAGTCAACGTAAGGA 1422887 30 100.0 37 .............................. TTGTACACGAGCACTGGGAAGTAGGTCAGTTAGTGCC 1422820 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 100.0 37 GTTTCCATACCTCAAAGGAAGTATTGAAAC # Left flank : TCACGGTACTTCAGGGGTTTATAATTCTGTTTTTCACGTACTTTCTGGCGGAGAACCTGAAGATCTCCGGTCTGATACCGGCTCTCATCGTCGGTTTCCTCATGTCCGTTACGATCGCCAGCTTTGGCATAGCACTCGCCCTGAAAATGGAAAGCACAGAGGGTTTTCAGATGATAATGATGACACTGATGATGCCTCTGATATTCCTGAGCGGAGCCATGTATCCGATAGACTCCATGCCGAACTGGATGAAAGCGATCGCCTACATCAACCCACTGACCTATGCGGTCGATGCCTCAAGAGGTTACCTGGTTGGATCACACGTGATGAAGTTTTCCTTTGGAATGGACTGGGGCATTTTGAGCATACTGATGGTCGTGGGACTTCTTCTTGCAACAGAGAGTTTCGAAAGGGCAAGGATAAGTTGAAAACGATCTTTCAGAATAAACAGAGGCGGGAATTTCCCCGCCTTTTTTGTTTTTGGGTGGTTTTCATACTTC # Right flank : CCGATGGATTTCAAGGAAATTATACCACAAAGCATATCAAAAAGCAAGAGTATATGGGAACATACAGAGGATATTTCATCACAGGTGATTCTAACACACAGAAAGACCCAGTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAATGAAAAGCCTAAAGAAAGACAAAATCAAAAGATAAATTATCCTAACCTAGGTCAGGGCATTTTGGAGTGTTTCAAGGGAAAACCGTCTAGTTCCTGTTTTCACAAGTTTGTTCAAAAAGGTCCCCCTTAAAAGGTTAGAGACTAAGTGTGTGGTTTCTTTATTCATGATAGATATATGATGATAGATGAAGACATATTCTCATATTCTGTTTCACTTTCTTGCTCATTATTCCCTTTCTCTTGCATACATCACCTCTCTCAAACCCGCATGAATTTTTTCGTTACCGGTAATTGCATACTCCGTACCCTTCTTTCCATGCCAGTTACAATTACCACCCACCTTGTGAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCAAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //