Array 1 50590-51840 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSON01000014.1 Cronobacter malonaticus strain S3 ZB100013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50590 29 100.0 32 ............................. TAACCGGCTTGCAGATAGTTTTTCTTCCATCC 50651 29 100.0 32 ............................. CTGACCACGTTGAGGCGGTGCTGCGCAAATCA 50712 29 100.0 32 ............................. GCACAGCTTTTATTAGTAAAAACCGCTCCCAA 50773 29 100.0 32 ............................. TGTTCGATATCTGCCGTGGCTGGATAAGCCGC 50834 29 100.0 32 ............................. GTCGCGGTAATGTGCGTCAGGTAAAATCTATT 50895 29 96.6 32 ..A.......................... TAAAATCGCCAGCTGATATTCGCGCTCGCGCG 50956 29 100.0 32 ............................. GATTTAGCGCGGCTTGCGGCGCGGGTCCTTTC 51017 29 100.0 32 ............................. GCTATTCTCTACTCTTACGAGCACGTTGGCGT 51078 29 100.0 32 ............................. CACATTTTCAAGACTTATGCACAAACTAAAAA 51139 29 100.0 32 ............................. ACCGCAGAGTCAATAAAGGCGGGGAATTATCC 51200 29 100.0 32 ............................. GACAGGGAGACCGAGAAAAAATTACGCAAACT 51261 29 100.0 32 ............................. CATACCCGGCTGCGTGATTATTTTGTTGATGC 51322 29 100.0 32 ............................. GTCATCGCCACGATATTCATCGGTGGCAAGGA 51383 29 100.0 32 ............................. CTTTAATTCGCTTGAGCGCACACTCATGCCGC 51444 29 100.0 32 ............................. GGCGTGTATTTCAGAGCCGGTTATTTGGCGTG 51505 29 100.0 32 ............................. AATGCATGCCACTCTTCAACTCCTACGGCCAG 51566 29 100.0 32 ............................. GCTTTTTCTTTGAGTGGGTCGCCCTTCGCCTT 51627 29 100.0 32 ............................. GCTGGATTCTGAGTAGCGTACAGACTCGTAAT 51688 29 100.0 32 ............................. TTCGGTACGCCAGTGCCGATAATTCGGTCATT 51749 29 100.0 33 ............................. TCGTCTGTATCCGTTTATCCGTGGCCACCTCAC 51811 29 82.8 0 ................A.AT......AA. | T [51827] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGACCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACACTGGATCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTTTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCGGGATTTCGCGCCTGGCACTCGCCGCCCCATTTCCCGCCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 78530-79474 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSON01000014.1 Cronobacter malonaticus strain S3 ZB100013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 78530 29 100.0 32 ............................. GCGACAGGTGAATTCTACAGGCCAGAGGCAGA 78591 29 100.0 32 ............................. GCAGATAGTTTGCCGAACGATTTGGAGAGGGA 78652 29 100.0 32 ............................. GGTGCTTTCCAGCTACACGAATCCCTTCTCGA 78713 29 100.0 32 ............................. TCACGCGTTTGCGCGCCGCCTGCAGATCGCAG 78774 29 100.0 32 ............................. TGCAATTCTCTCAGCGACTTATCGATAGGTTC 78835 29 100.0 32 ............................. AAATTCCTGGATAAGTGGCTTGATACCCCGCC 78896 29 100.0 32 ............................. CGCACAACGTAGCGCCAGTCGTGCAGGGCGAT 78957 29 100.0 32 ............................. CGCGATCTCCGCCTCAAGGAGCAGTTTTTGCA 79018 29 100.0 32 ............................. GCAAGGCCTCTAAAATTCCCCAACCCGCTACG 79079 29 100.0 32 ............................. CGAGCGAGTGCCGCTTTATCGCACTGTGGCCG 79140 29 100.0 33 ............................. GAGGGATAACCGAGACCGGAGAACGCGGAGGCG 79202 29 100.0 32 ............................. CCATTCACTATCCCGGATTCCTGGACAGTGGA 79263 29 100.0 32 ............................. GCATCGAGAACTTCCATTAACGCCTCACTGCC 79324 29 100.0 32 ............................. ATTCCGGGCGATAACGGCAGGGTGATTAGCAA 79385 29 100.0 32 ............................. TAATCAACGTATTGACGCTGAACATCTTCCAC 79446 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATTGCCAGGCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //