Array 1 305-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTP01000005.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain DSM 16992 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 304 29 100.0 33 ............................. GAGGCCGACGAATTGGATTGGGGCACCGGACTG 242 29 100.0 32 ............................. TGGGCAGGCAGCGTCTCGCCCTTGTGGTCGAA 181 29 100.0 32 ............................. GGACGTATGGTGTGTGTTTGCGGTAGTCTTTT 120 29 100.0 32 ............................. AATCGGAAAACCCACACTCCCGACAACGGTGC 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : | # Right flank : CTTGGGCGAACACCAACCATTACCGGACGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 243-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTP01000006.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain DSM 16992 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242 29 100.0 32 ............................. CGCCTTGTACACGAACCCGACGACGCCGGAAG 181 29 100.0 32 ............................. TCCTCACGCATAGGGTCAGGCAAATACGTTAC 120 29 100.0 32 ............................. TGCTGGCCGTCGCTGATGAGGCCGGCAGGGCG 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : CCACATATCAAGACTCCTTTGC # Right flank : CAATAAAATACCACATATCAAGACTCCTTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 213-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTP01000003.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain DSM 16992 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212 29 96.6 32 ............................T AGGTGTTTTATCACCATGTCTCAGATATGCCA 151 29 100.0 32 ............................. CGTACCTTAGCCATACTTCTCCGATGGCTTGC 90 29 100.0 32 ............................. GGACGTATGGTGTGTGTTTGCGGTAGTCTTTT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : A # Right flank : C # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4386-4113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTP01000004.1 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 strain DSM 16992 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4385 29 96.6 32 ............................T TGAGCCTGTGCGTAAGCATTGTTAATGCCCAT 4324 29 96.6 32 ............................T AGGTGTTTTATCACCATGTCTCAGATATGCCG 4263 29 100.0 32 ............................. TCGACTTGAGCGAGATAGTAAGGTGGAATTCG 4202 29 100.0 32 ............................. ACGGCGATAATCAGATTTTGCGCTTGAGGATG 4141 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GTT # Right flank : TCATAGTTGAATACACCAATATCGCCATCCAGCTTGCCGATGATTACTACCATCGTGTGCGCCAGTCATGGGCCAATCATGCCGGAGTGAGCCTTCCGGCACTCGAACGATACGGGTTCACTGACGTCGACCGGGTACTATGGGCCATGAGGGGCGGCTTGGCCAACACCGACTGGAACGGTCTGAAATACCGGGACGTGAAAACCGGAAACAGCAAGGCCGTCATCACCATGAGTGACTTATGGCCAAACCTGGCCAATCCGGACGACGCCCAACAATTCATAGTCGATATGATGCGCAATGCGCTACGCCTGCAGACACAGCGTAACATTCGGCTGGATCCGAGCAATCCACGATGAGCCCGAGTGCCGCAGGGCAGGACGTGCGCTTTTTGCGCGATGCTCGCCTCGCGAGGATTCGCATACACCAGCCAGGAGGTCGCAGGCGGCGAGGGCAACGCATTCCACCACGATTGCGATTGCCGCATCATCCCGACATGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //