Array 1 64452-63934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGEI010000002.1 Escherichia coli isolate 2016-17-164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64451 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 64390 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 64328 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 64267 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 64206 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 64145 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 64084 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 64023 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 63962 28 75.9 0 .A.........C..T....T-.G.....C | C [63937] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91706-90152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGEI010000002.1 Escherichia coli isolate 2016-17-164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91705 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGACGTA 91644 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 91583 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 91522 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 91461 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 91400 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 91339 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 91278 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 91217 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 91156 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 91095 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 91034 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 90973 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 90912 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 90851 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 90790 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 90729 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 90668 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 90607 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 90546 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 90485 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 90424 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 90363 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 90302 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 90241 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 90180 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //