Array 1 28492-27267 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFQG01000015.1 Lactobacillus jensenii strain M166 NODE_15_length_44471_cov_358.601795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 28491 36 100.0 30 .................................... AATAATTAAAATAATGCATCCTTTTAATTA 28425 36 100.0 31 .................................... TTTCAATGATTTTAGGAATTTGTATGTTAAT 28358 36 100.0 30 .................................... TTCTGTGGTTGTTAAGGTATCAATCTCACT 28292 36 100.0 30 .................................... TAAATTTCGCAATGAAATTGACTATGAAAC 28226 36 100.0 30 .................................... AGTTTCAAATTGTTGATGACATTGCAGAAT 28160 36 100.0 30 .................................... AATTTCTTTAATTTCCGGAACACCAGCAAT 28094 36 100.0 30 .................................... TGATAAGTTTCCCGAGACTAACGTTGACAA 28028 36 100.0 30 .................................... TTTTAGCAACGAGGAAGTAGACAATGACTA 27962 36 100.0 30 .................................... AATGGCAGATTTCAATCAAATAACACTTAG 27896 36 100.0 30 .................................... TGTAACCTGTTACTGATGGTGCTGTATATT 27830 36 100.0 30 .................................... CGCGACCAGAGTCATCGGCAGTTGTATAGT 27764 36 100.0 30 .................................... TGTTTAAAGTAGTAAACAAGACTATTGAGC 27698 36 100.0 30 .................................... CTCTATTTTAATCTGCATACATACATGTAA 27632 36 100.0 30 .................................... AAGACAATACGTAATAAGGATATTGCACAA 27566 36 100.0 30 .................................... AATATATCAAGCCTGAAGCATTAGATGGCT 27500 36 100.0 30 .................................... GGCTGTTAATGGTCAAATTCAACAAACTTA 27434 36 100.0 30 .................................... ACTACTTTCAATTTCTCTGTCAAGCTTCTT 27368 36 100.0 30 .................................... AAAAGTAGTCGATGAATATTTAAGGTTAGT 27302 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.9 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCATTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG # Right flank : GTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //