Array 1 258772-257932 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLA01000015.1 Actinomyces naeslundii strain R13240 R13240_contig015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 258771 37 100.0 38 ..................................... GACATCGTTCAGGTATTCTGCTTGCTCCTCAAAACTCA 258696 37 100.0 38 ..................................... TTGAGCCCCTGTCTCGTAGTAGCACAGCGCTACTACAT 258621 37 100.0 36 ..................................... AAGTCCAGACGTTATGGAGGCGTCGTCCGACACGTC 258548 37 100.0 36 ..................................... CTTGTCGTCCCCAACGAGGATGATCTTGCCAGGAGC 258475 37 100.0 34 ..................................... CAAACATGGAGATTATCGCCGTGACTGGGATGAC 258404 37 100.0 36 ..................................... TCGATGTCGGACTCCATGAGGATGACCCGTGTCTTG 258331 37 100.0 36 ..................................... CTGACTGTGACGCTTCTTGCGCCATCTTCTGATATC 258258 37 100.0 34 ..................................... ACAACCTTGGCAATCTCCTCAAGAACAGCCTCAG 258187 37 94.6 37 .......G.....T....................... GTTAGCCTCCCGGATCTTATCACGGGTCTCGTCATCG 258113 37 94.6 35 .......G.....T....................... TCTCGGTCCGACGCGCTTCCGCGTCGGCATTCCGC 258041 37 94.6 36 .......G.....T....................... ACGAGGACTGCGTGCTTGCGCCACTCGTCGGCATCG 257968 37 75.7 0 A.................T.......CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 96.6 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGCCCTGGCGGTTCTGACCTTCATCGGCCTGCCCCTGAGCGTGTTCCTGGAGATCTGGTCCAATTGGGAGGCCGCTAAGGGCATTGCGGTCCGGCACCAGCACATCGGCGGCTGGGACGCAGGATGGGGATGGATTCTTGGCTTCGGTCTTATCGGGTCGGTCCTCATCGGCGGTGGGATCTGGTTGCTCGTCGACAAGCTGGGCAGCCGGGCGGCTCGGCGGGGGAAACATTCCTGACACCGAGTCCAGGGCCCGGTTCCACCTCCACCACAGCGGGTTGTGCCTGCAGTCACAGGTCGAAACGTCGATCTTTTGGCTTGGCGTCGTTGGAAGTTGGTAGCTGAAGGCGCCCGAAGGGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGTCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCCCTCCCAGAGGCAGGG # Right flank : GACTTTCAGTCCATCCTCATCTCCTTAACGAGCTGAGAGGCCGAGCGGCTCGGCGAGCGAAACGTTCCTGACACCGAGTCCAGGGCCCGGTTCCACCTCCACCACAGCGGGTTATGTCTGCAGTCACAGGTCGGAACGTTGATCTTTTGGCTTGACGTCGTCGGAAGTTGGTAGCTGAAGGCTCCCGAAGGGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATTGGGGCGGTGCCGGCTGGCCCCGCGGGGTGCTCGCGGAGCCGGCGACGCTCCAGCCCCCGGAAGCGGCGCAACGACGCCACTCCCAGAGGCAGGAGCCAGAAAGCACCTCGCACCAGAAGGTGCATTAAGACCGAATCTCGACCTCTTTGTATATCGCAAATGCAATGTCAGAAAGCACTTCGCACCAGAAGAACTATTCACGGGAATTTCCGTGCAATGGTTGCCAACAGGGGTGGCAGATTGATGAGCAGTGTCCACACAGC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAGGCACCTAGCACCAGAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 275753-275495 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLA01000015.1 Actinomyces naeslundii strain R13240 R13240_contig015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= =================================== ================== 275752 39 92.3 32 ..C....A............T.................. TCATCCTGATGGGCGGCGGACTGAGCTGTGAC T [275729] 275680 39 100.0 34 ....................................... AGCATTGATACAAGCTGGGCCATCTACATTGTGA 275607 39 100.0 35 ....................................... TACAGGCGAGGTCGTCATCGTCGATCTTGCCCTCC 275533 39 84.6 0 A.C....A..............A...A........A... | ========== ====== ====== ====== ======================================= =================================== ================== 4 39 94.2 34 GGTCAGACAGCACCCAGCACCACAAGGTGCATTAAGACG # Left flank : CACCACAAGGCGCATTAAGACTCACCACCGTCAGTCTCCAACTCGATTAGGTTATCCGGCCAGGAAACGCCAACATCATAAGGTGCATTAAGACTCTCGGACGGACCTAGGGTTGACGTCGAGGGTGCTGGTCAGAAAGCGCCCAGAATCAGAACGCCTACTGACGGGACTTACAAGTCCACCCTCATCTCCTTAACGAGCCGAGAGCCCGGGAGACTCAGTTGAGGAAACGCCCTTGACGCCGAGTCCAGGGCCGGCCCCGCCCCCACCACCGCAGTAGGCTGTGTCCACAATCACAGGCCGGAGCGTCGACCTTTTGGCTTGACGTCGCCTGAAGTTGGTGGCCGGAGGTGCTCAAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCAAAAGGTGGTTAAATTGGGGCTGTGCTGGCCGGTCCCGCGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCTGGAAGTGGCGCAACGACACCGCTCCCAGAGGCAGG # Right flank : CAACACCGCGATCCTAATGACCCTTAATCTTGACGACAGAAGGCACCTCGTACACCAGTGAGAAGCATCAAGTCCGTATCCCGTCGGTCGCCTCGCACGTTCCAGCCGAGGGACCCAAAGCTCTGACGGACCGACAGAGGAGGCAGGACGTGCCGATAGTCACAGTCGGGAACGTCGATCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGAAGGAGCTCAAGGTGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCACTGCTGGCCGGTCCCGCAGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGTGCAACGACGCCACTCTCAGAGGCAGGGGTCAGAAAGCATCCAGCACCAGAAGGTGCATTAAGACCATCACATACCCGATGGCGACCCCCGGGAGTAGGGCGTCAGAAAGCACCCAGCACCAGAAGGTGAATTAAGACTTTATCGGTCGGTAGCTTACCTC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGACAGCACCCAGCACCACAAGGTGCATTAAGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 1558-1314 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLA01000008.1 Actinomyces naeslundii strain R13240 R13240_contig008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================ ================== 1557 26 92.3 48 .C.....G.................. TGCATTAAGACTTGTCGTCCTGCCAGGCATCAATGGTGTCAATCTCGC 1483 26 100.0 47 .......................... TGCATTAAGACCTCAATAGTCTTCCCTACAAGAGCGTCCTCCACCTG 1410 26 100.0 45 .......................... CGAATTAAGACGGTGGTATAAGCAGCACCTACCGTAGCGCCGATT 1339 26 88.5 0 ................G....G..T. | ========== ====== ====== ====== ========================== ================================================ ================== 4 26 95.2 47 GTCAGAAAGCACCCAGCACCACAAGG # Left flank : CACGACGTCGATACTCCTCAGGCGAGGGGAGATCAGAAAGCACCCAGCACCACAAGATGCATTAAGATGTCTGGTGTACTCAAGAAGAGATACGAAGCCTCTGCGTCAGAAAACACCCAGCACCACAAGATGCATTAAGACGCAACACCGCGTCCCTGATGACCCTTAATCCTGGCGACAGAAGGCACCTCGTACACCAGCGAGGAGCATCGAGGCCGTCTCCCGTCGGTCGCCTTGCGCGCTCCAGCCGAGGGGCCCAAAGCCCTGACGGACCGACAGAGAAAGCAGGACGTGTCGATAGTCACAGTCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAACTGGTGGCTGGAGGTGCCCGATGGGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGAGGTGCCGGCCGGCCCCGCAGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAATGGCGCAACGACGCGATTCCCAGAGGCAGGG # Right flank : CCTACTGATGGGACTTACAGCCCATCCTCATTTCCTTAACGAGCTGAGCGGCCAGGCGGCTCGGCGGAGGAAGCACCCTTGACGCCGAGTCCAAGGCCCGACTCCTCCACCACCACACCAGGATGTGTCCGCAGTCACAGGCGGGGACGTCGATCTTTTGGCTTTGCGTCATTGGAAGTTGGTAGCTGAAGGCGCCCCAGGGGGCGTCGGTGGAGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATGGAGGCGGTGCTGGCCGGCCCCGCAGGGTGCTTGCGAAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCCCTCCCAGAGGCAGGGGGCCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTCACTGATGACCTGCCCAGTTGAGCCATAGTCGTAAAGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCAGTTCCAGGGATCGTTCAGCCAGGCAACCATCTCGTGCCAGAAAG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCACAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 3006-2609 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLA01000008.1 Actinomyces naeslundii strain R13240 R13240_contig008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3005 37 100.0 33 ..................................... TTTCTGGCATCGCGACGCATGGAACGGCTGTCC 2935 37 94.6 34 ................T....G............... GAACAGGTCGGTGACCTCCAGATCAATCCCTTTG 2864 37 100.0 34 ..................................... TCCGAGCCCTCGTAGTCGCATATCACCCCGGTCC 2793 37 97.3 36 .....................G............... GAAGACTTCTCGAGCGTCCGGCGGCAATACCACAAG 2720 37 94.6 35 .....................G.....A......... GCAACACCGTGACCCTGATGACCCTTAATCCTGAC 2648 37 75.7 0 .A.....G.....TC......GC...A....C...G. | G,CA [2623,2628] ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 93.7 35 GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Left flank : GGCCGGGCGCATCGAAGCGGACGAATACGGAGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGTGTGGTGGGTGCGGCAGGGGAGGCCGACGGCGGCGCCGGCTGGTGACGGGAGACCGGCGCAAGGCCGTCTACCTTTTTCTTTCTGGCGACACTACCGGAGGGGAGGCTGCCTGTACGGGGAGTTCGAGAGGTCGACGTTCTTCAGCGTCGAGGAACCGGAGGAGGCGGAGAGGGAGAGGCCCGGCGGCGTGCCGGCCGAGCCACGGAAGCACAATGTGTCGACAGTCACGGGTGGGAACGTCGATCTTTTGGCTTGACGTCGTTGGAAACTGGTGGCTGGAGGTGCCCGATGGGGTGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCCGTGCCGGCCGGTCCCGCGGGATGCTTGCGGAGCCGGTGACGCTCCAGCCCCTGGAAATGGCGCAACGACGCCGCTCCCAGAGGCAGGG # Right flank : CGTCTCCCGTCGGTCGCCTTGCGCGCTCCAGCCGAGGGACCCAAAGCCCTGACGGACCGACAGAGGAAGCAGGACGTGTCGATAGTCATAGTCGGGAACGTCGACCTTTTGGCTCGACATCGTTGGAAGCTGGTGGCCGAAGGTGCCCGACGGGGCGTTGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATGAGGGCGGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCATTCCCAGAGGCAGGGGTCAGAAAGCACTCAGCACCACAAGGTGCATTGAGACTTCCGCGTCGGCGTTCCTCGTAGCCTGGTCATCCAGTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGACAGTCCCCTTAATGATTTCGTTCAGCATCTCCCACGTCAGAAAGCACCCAGCACCACTAGGTGTATTAAGACTCCTCTCGTGTGACACCCTCAACCCAA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //