Array 1 9812-9066 **** Predicted by CRISPRDetect 2.4 *** >NZ_BQFX01000026.1 Pasteurella canis strain PA57 Pasteurella_canis_PA57_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9811 28 100.0 32 ............................ TGTGAATCCTGTTTTATCTAAATGAGCTAATA 9751 28 100.0 32 ............................ ACGTCAGCCAGATTTCTGAATTATGTTCACGA 9691 28 100.0 32 ............................ CAAGACATATAAACCCCTAAAAATTGACCCGC 9631 28 100.0 32 ............................ TTTAGATGCCTCTTCTAAGCATTTCAATCTAA 9571 28 100.0 32 ............................ GAAGGGTTGATAAATATTACCCTGCCACACAA 9511 28 100.0 32 ............................ TTTTGCGCCAAGTAAATCATCAAGCGCAGTAA 9451 28 100.0 32 ............................ ATTAAAAAGAAAATAGCATCAATATCGTACTC 9391 28 100.0 32 ............................ AACATATCTTGATACAAACTAGATGCTCTAGC 9331 28 100.0 31 ............................ AAAAATTCGTCTTGCGATGTCATATACTGAG 9272 28 100.0 32 ............................ TGTAAACACCATTAGAGGTGGTGTTGAGCAAG 9212 28 100.0 32 ............................ TAATTCTGCACCTATACCACAAATTGTATTTG 9152 28 100.0 32 ............................ TGATCAATATACACTTGCAACAAATCAGGATT 9092 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCAGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGGGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCGCGTACTATTGAAGGTCTAGAGCCTCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAGTCAGCAAAAAGCAAAAAGCGCGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAACACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTGAGCCAAACTGATTAATTTATTATACAGGTAACCCTTTTTTCTTAATGAGTTTTTTATCTAATAAGATCAAAGGGTTATTTTTATAGCTAAAAAAAGGGTTTTCGTATATAAAATGTGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCATA # Right flank : CAGAAAATAAAGCATCGGATACTAATTGTTGTGTAAGCCAGTTTAGTCTGTTTTGCCTATTTTATCGTTGTACATTTTGTTTTTAACTTGATAAGAAGGACAAAAAGACAACCGCACTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAGTGCGTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCGTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAATAATGCTTGCCCACCAGCTTCTGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATTAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCCAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 95994-94046 **** Predicted by CRISPRDetect 2.4 *** >NZ_BQFX01000026.1 Pasteurella canis strain PA57 Pasteurella_canis_PA57_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95993 28 100.0 32 ............................ AAACCTCATTTTGCTGCTCTGCGAGTTTAGCT 95933 28 100.0 32 ............................ CTCGTAGAATGAAAGTGTCAGAAGCTGTATCA 95873 28 100.0 32 ............................ TTGAGGGGTAAGGGGTGTATTTGTATGTAATC 95813 28 100.0 32 ............................ TTAGCAACAAGACCAAAGACTAAAAAGCCCCC 95753 28 100.0 32 ............................ GTCTTTTGTTGTGTAATATGCAATAGACCATC 95693 28 100.0 32 ............................ TCGAGAGAAATTGTGGAAAGGTTGGTTAGACC 95633 28 100.0 32 ............................ ACATTTTCTTTTTTGATGCCCATTTAAAGCCT 95573 28 100.0 32 ............................ GCGAATACAACAGCTATGTATGCGCTTCAATT 95513 28 100.0 32 ............................ TACGTGGAGAATCTCTCGGTAAACGGATAGAT 95453 28 100.0 32 ............................ TTGAAACAAATTGTTTGGATTGTCCGCTTTCT 95393 28 100.0 32 ............................ ATGATTTTTTCACTCAAGATATACTCAAAATC 95333 28 100.0 32 ............................ TGTTCCGCATCCCAAGAAAGATTTACCAATAG 95273 28 100.0 32 ............................ ACTTAGACGCTTGGGGAGCTTGGGCTTTTAAT 95213 28 100.0 32 ............................ AAAAGAACCAGGCAAAAAAACACCTGGTTCTT 95153 28 100.0 32 ............................ ATTCAGAGCTCTCCTTATCTTCGTCGCTCTTC 95093 28 100.0 32 ............................ TATTTCAAAAAAAGCCTCTAAAAATGGTTCAG 95033 28 100.0 32 ............................ GCACCCAGTCATTAAGCAACTACACTTATCTT 94973 28 100.0 32 ............................ ATTGACGAATCCGTTAAAATTCGCCAGTGTCA 94913 28 100.0 32 ............................ TGAAATGTTTGCCACTTATCAACTTGGTTCAA 94853 28 100.0 32 ............................ TCCTATAAATAAAAAACCGCACAAAAGTGCGG 94793 28 100.0 32 ............................ ACTGTTATACCTTTTTCGTGGATTAAGACATT 94733 28 100.0 32 ............................ ATATTTTGGGCTTGATTTCGGCTTCGCTAAAG 94673 28 100.0 32 ............................ GCTACAAGCAAGCGACGACAGTTATAATTTTA 94613 28 100.0 32 ............................ AATAAAAGGCAGCTCAATCAGTTCAAAAGAAA 94553 28 100.0 32 ............................ TGAGATGAACAACACTTTCCACTGCTCCATCG 94493 28 100.0 32 ............................ ACCGCTCGCACGATGTAAATCGTTTAAACAGT 94433 28 100.0 32 ............................ ATCAAAAACAACAAAGCCGCACATTTCGTACG 94373 28 100.0 32 ............................ ATCCCATTTTTGCAATGTTGATTCTGGCTTAC 94313 28 100.0 32 ............................ TCTACAAGAAAATTGCTAAATCTTTATCTTCT 94253 28 100.0 32 ............................ AAGTTCAATATCATTATTGAGATACGTATTCC 94193 28 100.0 32 ............................ TTCTGGCTTGTATAATCCAGGTTGATGTACTG 94133 28 100.0 32 ............................ AGTCGAGAGAGCGTGAGAAAAGAGATTTTAGC 94073 28 82.1 0 ....................T.C.T.TC | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.5 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : CAGCTTTATCAACAATTATCGCAAGCAGGATTACAGGATTATGTGTTGATCAGTGGTGTGCATGAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGCCGAGTTCATCGTAAAGGACAAAGTACGATTCGTCGCACAGAAAAGTTCCTGAAGAGTATTGACAAATGGCGTGAAGGGATTCGTGAAGAAATGCAACAACGCCAACAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGCACAAATCAGTGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACTGTGCCACACTTTTAACCTAATTTATAACCCTTTTTTCTAATTGGCTAAATTAACCAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGCTCTTTAACAATTTGAAGAATCAATAAATTTTTATTAATATTATTA # Right flank : TGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTTGTGCGTAAGACACCTTATATTGCCTCTTCAGATTTAAAAACCATAATGCATTCTAAAAGAGCCAATATTTATTATTTAGAACACTGTCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCTAATACTAGTTGCCTGCTATTGGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAACTATCAAAAGCAGGGGTAATGGTGGGGTTTTGTAGTGGCGGTGGTACGCCTTTATTCAATGGAACGGAAGCAGAAATTGGCTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATCTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //