Array 1 429024-429600 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRU01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1031 NODE_2_length_664147_cov_49.7095_ID_3529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429024 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 429085 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 429146 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 429207 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 429268 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 429329 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 429390 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 429451 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 429512 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 429573 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445771-447450 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRU01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1031 NODE_2_length_664147_cov_49.7095_ID_3529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 445771 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 445832 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 445893 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 445954 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 446015 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 446076 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 446137 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 446198 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 446259 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 446320 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 446381 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 446442 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 446504 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 446566 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 446627 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 446688 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 446749 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 446810 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 446871 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 446932 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 446993 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 447055 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 447116 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 447177 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 447238 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 447299 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 447360 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 447421 29 93.1 0 A..............A............. | A [447447] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //