Array 1 163512-161364 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSME01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10640 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163511 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163450 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163389 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163328 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163267 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163206 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163145 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163083 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163022 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162961 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162900 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162839 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162778 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162717 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162656 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162595 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162534 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162473 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162412 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162351 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162290 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162229 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162168 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162107 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162045 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161942 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161881 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161820 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161759 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161698 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161637 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161576 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161515 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161454 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161393 29 96.6 0 A............................ | A [161366] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181136-179643 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSME01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10640 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181135 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 181074 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 181013 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180952 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180891 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180830 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180769 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180708 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180647 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180586 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180525 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180464 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180403 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180342 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180281 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180220 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180158 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180097 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180036 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179975 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179914 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179853 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179792 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179731 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179670 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //