Array 1 48825-50133 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNQV01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 25339-1 NODE_11_length_92204_cov_5.71361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48825 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 48886 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 48947 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 49008 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 49069 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 49130 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 49191 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 49252 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 49313 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49374 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 49435 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 49496 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 49557 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 49618 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 49679 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 49740 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 49801 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 49862 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 49923 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 49984 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 50045 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 50106 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGACGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66266-67192 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNQV01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 25339-1 NODE_11_length_92204_cov_5.71361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 66266 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 66327 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 66388 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 66449 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 66510 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 66571 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 66632 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 66694 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 66797 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 66858 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 66919 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 66980 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 67041 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 67102 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 67163 29 96.6 0 A............................ | A [67189] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //