Array 1 476634-477943 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWL01000002.1 Salmonella enterica subsp. enterica strain SG14 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 476634 29 96.6 32 .............T............... CAGTATTTCGGTATGGCAAGCAGTAGCGCGAA 476695 29 96.6 32 .............T............... CTCATCAGATAAACCCCTTTGATTTATCCCGG 476756 29 96.6 32 .............T............... CCGGCGCTTTCAATATTTGAACACATTCGGTG 476817 29 100.0 32 ............................. TCAAAATCCTAAAGTGTCAATTTTTAGCCCAG 476878 29 100.0 32 ............................. GGTCGCTATTTCCTGCCCCCTCGGTGGTCGAG 476939 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 477000 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 477061 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 477122 29 100.0 33 ............................. GCAACCGGTGCTGAACCGGTGGCGGCTGTCAGC 477184 29 100.0 32 ............................. CGACTCATCTCCCTGGTGTGGCTGGCAGTACA 477245 29 96.6 32 .............T............... CTCCGCGTTACGCCGATCGCGCACATTCCAGC 477306 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 477367 29 100.0 32 ............................. CCCCGGTTGGCTTCGACAAAACTGCAATTGCA 477428 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 477489 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 477550 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 477611 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 477672 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 477733 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 477794 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 477855 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 477916 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494075-496545 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWL01000002.1 Salmonella enterica subsp. enterica strain SG14 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494075 29 100.0 32 ............................. GCGACATTAAATTAGCGGTGTTGATGCTGGTG 494136 29 100.0 32 ............................. AAATACGACAGCGCACGTTAAAAAACGAAATT 494197 29 100.0 32 ............................. GCATTAATTTAAATAACGCAATTCAGTTAAAT 494258 29 100.0 32 ............................. TGGGAAAACCTGCTCAAAGAGGATATCGGGTC 494319 29 100.0 32 ............................. GCTATATCCCCTGGGGCGTGGCCGCAGCGGGC 494380 29 100.0 32 ............................. GGCGGCACGTTGTTACTGTTTCCCTCAGTGGT 494441 29 100.0 32 ............................. GAGCTTTGTTATATGAAAATTGGATTGATTGG 494502 29 100.0 32 ............................. CTGGCGGGCGCTGAATTTATCGCCGCCGACTA 494563 29 100.0 32 ............................. GCTATAGAGCGCCATCTCCGGGAGCTGACTAA 494624 29 100.0 32 ............................. ATCGCAACTTTTTATCGTGATATCGAGCAATC 494685 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 494746 29 100.0 32 ............................. CGAGAAATTTAAAAATGGAAAATACCTCCGTA 494807 29 100.0 32 ............................. AGTAACCCGTCCTCGTGCCAGCGGCGAGAGCG 494868 29 100.0 32 ............................. TGCGGGAGTACTGGGATCACGATTTCAGCACG 494929 29 100.0 32 ............................. AATACCTACGCGAACGAACAGTGGCTGAAAGG 494990 29 100.0 32 ............................. GAGATTTAAATGATCCACACGATTACGTTAAA 495051 29 100.0 32 ............................. GCCGCGTTGGTGGACGACGTCGGGACGATTTA 495112 29 100.0 32 ............................. GTATCAGGGCGTTATGTAAAAATCTTCTTTCA 495173 29 100.0 32 ............................. TTTCCGAAGACCTCGGCTGGCCCTTTGAAAGG 495234 29 100.0 32 ............................. AATAATATATCAGCCCCGATTCATCATTCGGG 495295 29 100.0 32 ............................. GAGCATGTTTTCGGCCGGAACCTGCCGCGTGT 495356 29 100.0 33 ............................. GTGGCGTTTAGTAAACAACCACACAACGAGCGG 495418 29 100.0 32 ............................. ACGTAGATATTTGAGGGGATTATGGCGAAAAA 495479 29 100.0 32 ............................. GCAAGCTGGGCAAATGCGGCCACGGCGGACCA 495540 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 495601 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 495662 29 100.0 32 ............................. TGAAATAAATAATTCAAATCCAGTTCTTAGCG 495723 29 100.0 32 ............................. GCCTTCTTCCGTAAGCGCCAGCACGTGCACAA 495784 29 100.0 32 ............................. TCGGCCTGTGAATACTGATAACTGCGGCTGTT 495845 29 100.0 32 ............................. AGTCTCAGGAGCCACCTCCCCCGGAATCTGAA 495906 29 100.0 32 ............................. CTAAAAATGGATGTGGCGCCGTAGGGGTTTGC 495967 29 100.0 32 ............................. GAAATATTTTTCCTGACTCCTCCGACTGTTGT 496028 29 100.0 32 ............................. CAGTTAGCTAATCGTGCATGGCGTACCGAAAC 496089 29 100.0 32 ............................. GGCGGTGCCGCAGGCAGCAAACATTCAGATTG 496150 29 100.0 32 ............................. CTTGATAACGCGGCTGGAACCAGCACCGAACA 496211 29 100.0 32 ............................. AGCATTATTCAAAGAAAGCGCGATAGAAAAAA 496272 29 100.0 32 ............................. CCTCGGAAACGGCCAGCGCCGACAACGCCAGT 496333 29 100.0 32 ............................. TCTATTCAAGTAAAGGAAACGGGCTGACTGCA 496394 29 100.0 32 ............................. TTAATGCCGCTGTAAGCTGTGCCGGTGTGAAA 496455 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 496516 29 96.6 0 ............T................ | A [496543] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //