Array 1 61195-63114 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYE010000003.1 Corynebacterium diphtheriae isolate YEM0040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61195 29 96.6 32 ............................G TTCCGTAGTCACCTAGTACAGGTACTGCGGCC 61256 29 96.6 32 ............................T ACGCCACCGCTAAAGGCACCGCATGGCGGGTC 61317 29 100.0 32 ............................. CTTAACGAACGCCGTCGTAGTACCCCCGTTTC 61378 29 100.0 32 ............................. ATCATTCCCACAGCTAAACGGCTTGCCAAAAT 61439 29 96.6 32 ............................G GACGAGTCCATCTCTGCCGAAAACGTGATCGC 61500 29 100.0 32 ............................. GATTGGATTAAGCCGGATCATCTTCACCTCCT 61561 29 96.6 32 ............................T GATTGAGCTTGTCACATTCGGCGTCGAACCGA 61622 29 100.0 32 ............................. GTAAAGGTATGTTGGGGCAAAGTAGATTTCCC 61683 29 100.0 32 ............................. CATCTGCCATTTTGTCAAATCTTTTTGGAAAA 61744 29 100.0 32 ............................. TTTTGGCCCTGTGGAGCCGTAGGTTCGTGCGA 61805 29 96.6 32 ............................G TCTCCTTGATCTTGCCAGGCATTTCCTTAACC 61866 29 100.0 32 ............................. GGAGGTAGCCGCCGATTCTGCTAGCTTTTTTA 61927 29 100.0 32 ............................. CTGTCTACCGTTGTTGGCTCACCCATAACTAG 61988 29 96.6 32 ............................G AAGAACAAACGGAACTCGCCGATTCCCTCGGA 62049 29 100.0 32 ............................. ACCACCCCAGTTGTAGCGCGCACCCTCAAGAG 62110 29 100.0 32 ............................. ACGCCACGACATGGTGGAGCCACCGTGGGAGG 62171 29 96.6 32 ............................G AAAAGCCCCCACAGGGTGGAGGCTCAAACAGA 62232 29 96.6 32 ............................T AAGGTGCGAATACATAATCCTGGTATCAGGGA 62293 29 100.0 32 ............................. TTGAGCTGGGGGCCTAGCAATGATCGGCAAAA 62354 29 100.0 32 ............................. GATCAACGCGACGGCGCGACTACCACGGGTAG 62415 29 96.6 32 ............................G CACGCGATGGATTCGGCGCGGCTTGCTGCGGA 62476 29 96.6 32 ............................T TTTCCGTGAGCATCATAGACCGTCAATCCCAG 62537 29 100.0 32 ............................. CACAGACGATGCGACTTCCTCAATCGAGAAAA 62598 29 100.0 32 ............................. CCTAATTTGGTGTGTGACCCTAGTGATGGGAA 62659 29 100.0 32 ............................. AACATGTTTGACACGGAGGGCAAAATGGACAC 62720 29 96.6 32 ............................T CATGAACGGATATGAAAAATGCGGTTGGTAAA 62781 29 96.6 32 ............................G GCTCGGATACCGTCGATAAGCTGCCGGACGCC 62842 29 100.0 32 ............................. TCCCAGCACTCCTCCATCGCTTTCCGCTCCGA 62903 29 100.0 32 ............................. TGTGGCTGCCCAGATGGGACAAAGTCTGATCG 62964 29 96.6 32 ............................G ACTCGCCCTACATAATCGGGGTATCAATACTG 63025 29 96.6 32 ............................G CGCTACGTTGACCTATCGAGGCCTTCCTCTGT 63086 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.5 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAAATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGTAGAAAAATTGCTGAAACAAAGTTATATGTAGTAAGTTCTAACTGTCTCTAAACATGCAGCTTGATAAGT # Right flank : CAAAGCGCGGATGGCGTCGATGTATTTGCGTCAGCAATATGACGCGAATATGTCGAAGCAAGGCAGATACATGCGGACTGATCGGCCGCGATTGATGCCGGAAGAAATCTACAAGATTGCAGGTGGCGACCGAGATATTGCGGTCTCATTGCTGCACAAGAACGGTTTCTTCTTGGATGCCTCGCCAACATTGGATTCGAAGCTTAGTTTTTTTACACGGGACAAAGTCGTGAAAGAAGCGATGGAGAGCGCTCGTGTGAAGTTGAAAGCACGGTATGGCAAAGAGTTAAAGCGTGAGGCGATTAAAATTGGTAGTGGTGATCCTCCGAGCGAACCGCCACGATGGTCGAAAAATGGCGGTGGTGATGATGAGATTCGGAGGCGGTATTTCGAGGATTTGCGTACAGCGGATAAACGCGTGCCAATTGAACACATCGTTACCGGGAAGGTGCATAAGAACGTTATCCAAGGTGCCCATGATCATTCCAGACGTTCATGGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //