Array 1 390444-390961 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMJQ010000016.1 Ligilactobacillus agilis isolate MGYG-HGUT-02390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 390444 29 96.6 32 ............................C TGTCCTGTCGTCCCAAATAAGCTCTTAAAGAT 390505 29 100.0 32 ............................. AAATGCCAAGCAAATCGTAAACAGTTCAGGAA 390566 29 100.0 32 ............................. ACGACCCGCAGTCTGGCAAGCTGACTAGCAAC 390627 29 100.0 33 ............................. ATCAAATGCACCAAATTCAAATGTACTCAAAAG 390689 29 100.0 32 ............................. ATTACAAAATTGGACGTGGTGTTTATTAATTT 390750 29 100.0 32 ............................. AATATGCTGCACTCCAACCGCCACGTCCTTCA 390811 29 100.0 32 ............................. ATCAGATAACCAATGCCTAACATTATCACAAA 390872 29 93.1 32 ..........................TG. TGTCAATTCTTGGAAACGAACTTGGGGTGAAG 390933 29 82.8 0 ......A.......A...........TGA | ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.9 32 CTTCTCCCCACACTGGTGGGGGTAATCCT # Left flank : TGTACGCAGAATAGCATTATTTCGATCAGTGCCGTACGTAAAGTTAGTGAAGAGTATAAAACTTTTAATCGGTATGTAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACAGGTATTACAGATACATTATTAGTTAACGAAGGTGTCGAACTGATAGATGGACTTAAGGATTTTATAAGTTTTTTAGGAAAATCCACCGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCGAGTAGGTTTAGACTCACCTGCTAATCGAGTAGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACAGTTTTAAAAGAATATGAGGTTGATAATACTCATCCGCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGCTGTTTACGGATTTAAAAATACTGGTTTATCAACGTTTTTTTAGT # Right flank : AAGCTAGGCTCTGGGCTGTAACTGTGGAAGCGGATTCTCCCCACACTAGTGGGTAAGCACTCCATAATGAGACGTATGTAAATATTTTCCTAATCCCCCTATACTACTAACATGGACATAGTATAGGAGGATTTTTTATGGAGTGCTTACGTAGTATGTATGTTAATTTTTTAGATGTTTTCAGTAAGTATATACAAGTAAGAAGGAAATAAAGTAAAATAATAACGTAATAGGATGGTGAAAAATAATTTGTGATATATAGAATATTTTGAGGAGGAGTTCCATGGCGGAAAAGGCAACAAGAGGAACGTTAACACATGTTGTTCACTGGGAAGCAAAGTTAGGTTGGCAGCATATAGATGTAGAGGAAGCAGAAAAAATATATGATGGAAAAACAGTTAGAAGTAGTGAACAGGTTTTGATGTGTTCGCTTTGTCATGACTACGTAACTCTAACTAAGTCTAGTACTAAGCGTCCTGCATATTTTAAACACAAAAGAG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTGGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 484142-486903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMJQ010000016.1 Ligilactobacillus agilis isolate MGYG-HGUT-02390, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 484142 30 100.0 38 .............................. GAAGGACGAACTCATCAAGCAGCCAAGGCCAAGTTGGA 484210 30 100.0 34 .............................. GATGAGAAGCACTAAGAACACTATCAAAGATAAC 484274 30 100.0 35 .............................. GCTTAAATCCAAGTTCACAGCAGCAGCAAGCGCGT 484339 30 100.0 36 .............................. AATCCAACGCCATGCCGGGGCCTGTTAAAGTCCCAG 484405 30 100.0 37 .............................. GAGAGACAGAAAAAGCTCTCTTGCTTGATTTGGTAAC 484472 30 100.0 37 .............................. CAGTTATCTAACTCAACGCTACAACGTAGGGGGGGCA 484539 30 100.0 36 .............................. AGTCAAAAGAGATTTGAAATGTTTAGAGATAATGAT 484605 30 100.0 36 .............................. CATGGCAGGTCTTAACCAAGGGTTATCTCAAAGCTT 484671 30 100.0 37 .............................. CCGTAGTTGTGACGATAGATATCGTCCAGCAACGTTG 484738 30 100.0 37 .............................. ACAATGAAATCAAAGACCGCAAAGGCAGATTAGTTAA 484805 30 100.0 38 .............................. TTTCGAGTTACTGTTCCACTTGCAACCAATTTGTCAAT 484873 30 100.0 35 .............................. CAAAAGTGGACGCATGGCAATTCACGCCTAAGCTC 484938 30 100.0 36 .............................. TAGAGCAATGGGTTACGAGCTAAACAAGCAGGGACT 485004 30 100.0 36 .............................. TGGAATTTGATACGCGCAAAGAAACAGGCCTAACTG 485070 30 100.0 37 .............................. CCTTACCGCTTGAAACCTTATGCTTCTTGACCTTGCG 485137 30 100.0 36 .............................. TGTCGAGGATAAAGATATGCCTAACACATATGTTGC 485203 30 100.0 35 .............................. GATATAGTCAGACCGCACAACTCAAGCTTAACTAT 485268 30 100.0 37 .............................. TAAATTGGATTTGTCGGATTGTACAAGATGAAAGGAG 485335 30 100.0 38 .............................. TTAGACGTCCAAGCAATCTGTTTTGACCCAGCACAATA 485403 30 100.0 37 .............................. ATAATGTCGTCTCAAATCATTCCATCTATTTTTCAAA 485470 30 100.0 36 .............................. CATACATCAGACCACTCTCACGTGATACAGGGTCTG 485536 30 100.0 35 .............................. TGAATCCTTGATTTAAATCGATTTTAAAATTCCCT 485601 30 100.0 36 .............................. ACGCAAGGCAGTCCCAGCCACAGAGCCTTCGATACC 485667 30 100.0 37 .............................. GTGAAGCAGGATTCGGATCTATTGCACAACAATTAGA 485734 30 100.0 42 .............................. TTATTTGTAATAGGGATGCTTGTTTCTGGAGTGGCTTCTGCT 485806 30 100.0 37 .............................. TGTGCTGCGTTAGTGGTTGCCTTGCTACCTGGTGATT 485873 30 100.0 36 .............................. GTTTTTTAGGTTGCTAGCATACTCAGGCATCCGCTC 485939 30 100.0 36 .............................. CAGTGATGCGGTCAATAATTGGATTTTCTTTTCTGC 486005 30 100.0 37 .............................. ATGCAAGCAGGGGCAAGTTTACCATCATAAATTCCCT 486072 30 100.0 37 .............................. CAAGAGAGCGCAAGCGCAAGAGGGGCTAAGCTTTATC 486139 30 100.0 35 .............................. GGTGAGCTTAAAGAGGCATTACAAGCTTTGCACCA 486204 30 100.0 36 .............................. ATCTAAAAGCTCACGCCAATTCTGAGGCGCACTCTC 486270 30 100.0 39 .............................. TTCTGTAAATCGCGCTTGTGCCCAATGTGTGCTTGGCGT 486339 30 100.0 35 .............................. GACTTGCCTGCTGTTACTAACTCAATTAATCTCCT 486404 30 100.0 40 .............................. GCTCTTTTCGATTGCGTGTTTAACTAAGCTAGGTCCCATT 486474 30 100.0 36 .............................. CAGCGTTAACTACGGGCGCTATTGCATCGTACCCAC 486540 30 100.0 37 .............................. GCCCTTTGGCGGAAAGCTTTAAGGATTGATTATGACC 486607 30 100.0 35 .............................. CGTAAGACGGATATTTATAAATGGCTTAATCAAAG 486672 30 100.0 38 .............................. ATTAGTTGCTTTACCGCGTCTAAGTTGAAGTTCAAATC 486740 30 100.0 38 .............................. ATTAGTTGCTTTACCGCGTCTAAGTTGAAGTTCAAATC 486808 30 100.0 36 .............................. GATATTATCGACAAGATTAAAAAGCACACTAAAGGT 486874 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 42 30 100.0 37 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : AATTAACAAAATGCTTGTTCAAAGCGATTACTCGCTAAGCCGCCAGTTTTACCAAAGCCTTGTCTGCTTCTAAACCTGCATTCGATAGCACACCCATTGCACTCGCCGTTTCTGCTAGACTGAACTTTGCCTGGTGGGCTGTTGATGATACATAGGACATCCCAACCCCTAAGGACTGAAACGAAGTTGATGTTACATCAGCCGAGTATGCTAGGGTATTAACTGCTTTTTTAGTCTGAACGGTCATTTCTTTAGTTGATGATAACTGCTTACCGTTCTTATTAACATTCATCCCAAAGCCTTCCAGAGTTTGGGAGGCTACTTCAACTACATCTTTAAAGTCATCACCTGACGCAATCGAACCTTGTAGCTCTGTATTCATTGCTCCAAGGGCTTGTTTGCCAGAGTAACCACGCTTAACTAGTTCCAAGTAAGCATCGGCAATTTCTTTTTGTGACTTTCCGTACCGAAGCGAATACTTTTCACCGTCAGCTTGCATC # Right flank : CACTGCGCCTTAAAAGCCTTGTATTATCAATAACTTAATCCATATATTCTGTCCATCACCTTATTTATACCTACAGTCATATATTACCTTCTCCTTCATTTTCTTTCAACCCTTGATATTTCGGGCTTTTAATCATCTGTCGATGTTACCCCTATTTTGCTTTATCTATGGTCGACAGATAAATAATTAGAAAAAGTTTGAAGTTTCATCAGACATATCCATTCCTAAAAACTGCTTATCTAGCCATTTCTTATTACGATTCTTAAAAATAATTACAGAGTCTTTATCATCTCTAATCCATTTTCCTAATTCAATCATTAACTTCTTTAACTGTGATTTAGTAAGCTCCCCTTCAAACACAGATTTCTGAACATGACTAAGATATTTTTTACAAATTTTAAAAACATGTCTTAAAACTTTAGCACCATTTTGATCCAATGCAATATCATAGACTAAAATTATATACACTTAAAATCACCACCATAACTTAAAAGGTTGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 592014-594361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMJQ010000016.1 Ligilactobacillus agilis isolate MGYG-HGUT-02390, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 592014 30 100.0 36 .............................. AGGTAGACTCAATGCTAGAATGGTTACATAATCAAA 592080 30 100.0 37 .............................. CTGCTTAACCAGGGCATTGTTGTCAACGTGTTAAACA 592147 30 100.0 37 .............................. GTATTGACTGAATTTTTTGGTGTAATTTTACATCGAC 592214 30 100.0 35 .............................. GCATGGATTCTACCTTGCCCTGCTCGCTAACTGCT 592279 30 100.0 38 .............................. TTAATGACGTTCCTAGGGTTGGCTTCACGGCCACGCCC 592347 30 100.0 36 .............................. GGAACAGATTTGTATTATTTAGCCAATTTGAAATTG 592413 30 100.0 36 .............................. TAGCGCTGATGAAGCTATTTAACCATAGTAGTCAAG 592479 30 100.0 36 .............................. TCAATCAACATATTTAACGTGTACCAGTCCAAGGCT 592545 30 100.0 39 .............................. CTGCTTAGTCATGATTAGAATACGCAGCAGCAAGGCAAA 592614 30 100.0 35 .............................. AGAATATGAACGCAAAAAAAAACCTATCCAAGTAC 592679 30 100.0 36 .............................. ATAGCACGTGTGTGATTGGCGAAGGCTATGAGATTA 592745 30 100.0 37 .............................. ATGCCCCTTCCACTTCTTACTGATTAAACGGGTCAGC 592812 30 100.0 36 .............................. AGAATCTGTAAATCCTAACATTAAGATTATATGCTT 592878 30 100.0 37 .............................. ATTTAGAATGGTGCACTAACAAATACAACTCAAATTA 592945 30 100.0 36 .............................. GAATTTAGCCCATTTCTGTCTATCATCACCTAAAAC 593011 30 100.0 36 .............................. AAGTAGCAATTCACGTGATAATTTAAAGAATTTTAG 593077 30 100.0 36 .............................. GGTAAGACTGAACTTAGGTCAATCAAGCGAACAGGC 593143 30 100.0 36 .............................. AGTTATGGAAGTTAATGAACAGGCTAAGAAAGATTA 593209 30 100.0 37 .............................. CTTAGGCGGTTTAATAAGTGCCTCAAATTCTTCTGAC 593276 30 100.0 36 .............................. TATATCGCAATGTGACGGCTTGTGATGAGTGATTGA 593342 30 100.0 36 .............................. CAAACGGCACAGGCGCATTCTAAGGCTTGATTCGTT 593408 30 100.0 37 .............................. AGGCATGATTCTAGCTAGTCAATCAAGTCCGTTATTT 593475 30 100.0 37 .............................. CGAAGTTAGTTACAACTTCAACTAAATTGTCTTCTGT 593542 30 100.0 36 .............................. TTTGTTATCAGCCAGTTTAAAGATGAAATTAGTGAT 593608 30 100.0 35 .............................. TCGGATTCATAAGAATATTTGAACGCAAAAAAACC 593673 30 100.0 37 .............................. TTATTTACCTGCTTTCACAAGGTCGGTTGCCCGGGCA 593740 30 100.0 37 .............................. AATATGTTCGTTAGGAATATCTTTTGCGTTGATAACG 593807 30 100.0 35 .............................. ATTCAACCAGTGAAGTTTAACCCTCTTAGGTCGTA 593872 30 100.0 35 .............................. CGTCCCCTCTAACAGACGGCCAGACTCACAACTTT 593937 30 100.0 35 .............................. CCTGCCTTCCCGGCGAGGGACTCCCCCCAATGTAA 594002 30 100.0 36 .............................. GATTGCGTAATCTTGTAATTCTTGTTGTTTTCCTTC 594068 30 100.0 37 .............................. AAGACAGGGATGACTAAAGCACAGGTGCTTGACTTGA 594135 30 100.0 36 .............................. TACATTTTTTGCACAAATTCTTTGCGAGCAAATGAA 594201 30 100.0 35 .............................. CACGCTAAAAACAACTCTAATAGCAAGCAGGGACA 594266 30 100.0 36 .............................. CTCATCGTTAGCGTTTAGATATCCTTCGGGTTCTTG 594332 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 100.0 36 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : TAAAATTATCATCACGATTATAAATTTTTGGTGAAGTAGAAAAATATCCTAAGTCCTCTAATATCCCTGTTTTTATCACTTGGGCAGTGAATTTCCTAACATCAAATCCCCAATCATTGCTGTAAGAACTATAAAGAGGAGGTTTATTAGAATACTTAGGTAATTTATCAATCGCATTATCTAAGTTCATGACTAAATATCTTTGCTCTTCACTAAGCATTTCTTTATTTCGTAAAGCGTAGTTAATTTTATAGGACTCCGAACTTTTATAACTTACTATTGCTCCTATTTCATTAGGCAAAGGATTATTCTTTTAATCCACCCAGTAAGCACCCACCGCACATCTACAATTAGGATGAACAGGAATTGTAGGAACATCTTTAACAACTTGAGTTTTCAAGCGTCTAGCCATTTCATCATAGCTTTGACCTGTTGTGATTCCCGCCATGATAGTCTGACTAAGTTTAGCTTGCAGCACGTCCATGTTAGCCCATATTCTT # Right flank : CACTACCCTTTAAAAGCTTTGTACTATCAACTAGTTTCCACGCGCATTCTGTCTATCACTACTTTTGTCCCCATATCTACATGATACTTTTTTCTGTAAACTCTTTCAAGCTCAGTAATTTCAACTTTTTCACTATCTGTCGATGTCCCCTTAATTTTGCTCTATCTACAGTCGACAGATGTAATACTTGAAGCTTAGTTAGCATTCCGAATTAAAACCATCACTATAGACTCTCCCCTGCAGGCCTTCAACGCATACTTCAGCATATTTTTTAGACTAACGAAAAACAAAAAGAGAGTATTAAAAAATACCGTATATTCGTATACAGCACTGACCAGGGAAAGTTATTATAATTGTTAGGATACTTTTAGGATACTTTTTCCTAAAAAAGCATTATATTACCAATATGTTCATAAAATATAAAGGTTGATGTATCAACAGTTACGAGGTCCAAAAATATCATAAAGCCTTATCTAAAATTATCTCCAAGCGTTCGGGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 603116-600758 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMJQ010000016.1 Ligilactobacillus agilis isolate MGYG-HGUT-02390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 603115 30 100.0 36 .............................. AGGCACGTTGGTCGATTGTTTCAATGAACCGGACCC 603049 30 100.0 36 .............................. AAAGAAAAAATTTTTTATGATGTTTTTAACTACAAA 602983 30 100.0 37 .............................. TAAGTGGGTTTATAACAGCATGACAGAGTGGCATAAG 602916 30 100.0 37 .............................. AAAAACTAAAAATTAAATGCCTTGCTTGCTCTTTTTT 602849 30 100.0 36 .............................. AAGTGACAGGGCTTAGTTATGAATTAATCTATTCAC 602783 30 100.0 36 .............................. CAGAATCACATTGAACCGCTTCTAAATATTGTGCCT 602717 30 100.0 39 .............................. TATCAAGTGAAGTCGGGCGAATACATAACAGGGAATTTA 602648 30 100.0 37 .............................. TGTATCCAGTCGGCGAACCAGGGTAGCTTATGATGAT 602581 30 100.0 36 .............................. TTCTTTATAACCTGCTTCAGCAAGAGCTTTAACTCC 602515 30 100.0 35 .............................. AGTGGTGAACCAAGGACAACCACAGACGCAACAGG 602450 30 100.0 38 .............................. ATGTTCTCAAAGCTCGGGAAATAATTGTAGTTTGGTTC 602382 30 100.0 36 .............................. CAGAGCCTGTATCACGCGAGAGCGGTCTGATGTATG 602316 30 100.0 37 .............................. CGAGATACATGGATTTAAGTCAAAACTTATCAACGCC 602249 30 100.0 38 .............................. TCTAGTTTCTTCTCAGTGCCGGTTGCTCGTCCTTGCTC 602181 30 100.0 36 .............................. TTAGATAACCAATATAAAGATATTCGAGTAGATTTA 602115 30 100.0 37 .............................. GGTTCTTCATGTTTTTAAGTTCCATGAGTGTTACCTC 602048 30 100.0 37 .............................. TAGTCTGTAGCCACATTCCCTTTTTCGAGTTGAATGT 601981 30 100.0 35 .............................. TTTGTTGATGCCTTCAGCAAGCTCGCCCAGTTCTT 601916 30 100.0 37 .............................. CAGTTTCGTGTTTAACAATTGGGCTAGCCGGTTCTTC 601849 30 100.0 35 .............................. CAGATTTTAGTAAGTAGTTGTTGATAAGTGTAACA 601784 30 100.0 38 .............................. GTCAGAACACCAATTAAAGAACAAAAGAAAATTGTAGA 601716 30 100.0 38 .............................. TGATGCCACCTTCCCGGCCGTCTGAGTTCATCACACTC 601648 30 100.0 36 .............................. TAGATAGAGCGTCCAGGGTCAATTATCACTGAAAAA 601582 30 100.0 37 .............................. TAGCGACTTGCAATGCTAGATAGCGTGTCACCATAGC 601515 30 100.0 37 .............................. AAGACAGGGGACTATTACCAAGGATGCAAGCGAACCT 601448 30 100.0 35 .............................. TGCTTTTCACCTACAATTAGCGTCAGGCCTTTTAG 601383 30 100.0 36 .............................. AAAGCTGACTAATCCCGGCACGATGACAAGCAAACC 601317 30 100.0 37 .............................. GAAGACGTCGAAGTCGTAAGAGAGACAGAAAAAGCTC 601250 30 100.0 37 .............................. GAAGACGTCGAAGTCGTAAGAGAGACAGAAAAAGCTC 601183 30 100.0 35 .............................. TGTCCAGCTTGGAGCTATTTGTATACTCTCCCCTC 601118 30 100.0 36 .............................. TACGGTGTCTCGCGAGCAAGCTCGCTTGCCCCTTGC 601052 30 100.0 36 .............................. CGTTGCACCTGGCGTGCATGGTTCTGGCATTACACA 600986 30 100.0 36 .............................. GCAATGTTACGAGCTCTAGCCACAGTTCCCCGACGT 600920 30 100.0 37 .............................. CAAAAACGAAGTTTGTCCCGCTCCCGGTTTTTGACTC 600853 30 96.7 36 ........................A..... TAGAAAGATATTGACAAACTTATTATACCGCTTAGA 600787 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 99.9 37 GAATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : ATGCCGAAACTAAGTCGTCTGAGTAGCTTGATTTTGTGGTTGATTTCTTTAATCGGGCCATTTGAGTATTTAGCAGACTTAGGAGTAGGAGATTAGCGATATTCAAAACGTAGCTTAGTTTTTTATCTATTGTTAAGCTATTTGATGTTTGAATCAAGTGATTATTATTGGTATTCTTAATGCTTTTAGGGTAAGTATCATCATGCTTCTTAGTTCACTGGACTTTTTCTCATAAGAAAATTTAGCTGCAAAATTGTTTGTACCTAGAGTGTTGTGGTGAAGCGCGTTTTTTACTAGCGACATTTGGTTATAGAGTGATAGTATCTGTCGACCTAAGATAAGGTGAAATAGTGCCAGTATCGACAGACGATAAAAAGGTTGATATTACAGGCCTTGAAAGAATTTAGGGAAAAAAGTAATATATAATTGAGAGTTAGATTGGGTGATAGACAGAATGTATGTGAAAACTAGTTGATAGTACAGGGTTTTGGGAGTGCAGT # Right flank : TGTTTAAAACATCAGCAGTGACATTTAAGCCTTGTTCTTTTAGAATTTCGCTTGCCTCACTTAAAGCTTTAGTTCTAGCTAATTCGGCATGTAAACTTGCAAGTTCTTTATCCTTAGCATCTTGCGCTTGCTTAGTTTTATCTTCTTCAGATAACTTTTTCACGGTCTTTTTACCCTACTTATATGCTTCAAGCACGACTTGGTATTTACTAACTCTTCTTCCAAGTCGTGCTTATCACCAGTCAATTTTTCTAAACGTTTTTGAAGTTTTTCGACTGTTTTAGCAGCTTTATCTTCCTCGCCCTTGCCGGCATTGTCTTGGTCGTTTTTCACTTCTTCATTAGTCTTTTCAACTTCTACATCTTGATTTTCGTTATCCATTACGAAAACTTCTTTCTTCTCGCAGTTAAAGCCTTGGGAGGCTACTCAGTTGTTCTTTAACGCTTGCAAGCAGGGAAAAGGCATAAAAAAGACGGCTATTGCTACTTGTCTATAATTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 612600-612127 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMJQ010000016.1 Ligilactobacillus agilis isolate MGYG-HGUT-02390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 612599 36 97.2 36 ..................T................. AATTCGATAAAGCAACATGTGTTTATACTTGGGAGT 612527 36 97.2 34 ..........................G......... TTATATAACTTGTATAAGTTAAATCCTCTTTTAG 612457 36 100.0 39 .................................... TCGTTTTGACGGTACTTCAAGTTCGTCTGGGTTCGCTTT 612382 36 100.0 34 .................................... CAAATCTTGACGATTTTGTAGTCGCCAAATTCGT 612312 36 94.4 39 ..................T..G.............. TCTTGTACCTCCTCTAAGCATTCATCGAAGTTAATGCCT 612237 36 91.7 39 ..................T..GC............. AGTTAGATAAAAATAAATCAAGATAAATAAAATGATACA 612162 36 86.1 0 ........................A.......TTGT | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 95.2 37 GATAGTGATGTATCTCCGCTAATAGGAGTCGAAAAC # Left flank : GTTAAGGCAATCTCCTTAAGTAAGCTCACTAATGAAACGAACCTTAATTGCTTATTGAAGCTGCTTGATTTAGATGAGCTAGATTCCTTAGAAGAATATCAAGCAGAATATTATCAAAGCTTAATGACTAGGGAAGTGGGCGGTCAAGCTAGACATTACCTGTATTATGTATTAAAGGATATCTTACTGCGTAATGCGTTGCGATTTGAGGGTAGTTACTTCTTAAACGTTTATCAAGAAGAGCAGATAAGCGAAATTTATTTTTATCCTAAGTCAGACACGAGCAACGATGAAGTAGCCTACCAAAGTTTTAAGGAGAATCTGCACAAGCTAGAACAAATGGCCTAACGGTTGAGAGCATATGTTATAATGGAAGTGTCAAGTGGGAGTGCTCGTTCAAATTCCGGGCGAACTAGGCTGAAAAAGGGATGGGGTGCCCACTTTTTGGACGGCTAAAAACAGCTCTTGAGCTTGATTTAACAACGATTTGGACGACATGG # Right flank : ATACAAAAAGCAGCCAAGCTACGATGAATGTAGCCTAGCTGCTTTGTTTGTTATAGGAATCTTTAATTATTGGAATTTTTCTATCTTGTCGATGGTGCAAAGACCGGTCAGGTAGCGTTGATTTTCCCACTCGGTTAAGTGGATGATACGAGGAGAAACTTCGTGATCGTTTAAGTGACCATGATTTTCGAAGTTAGAATGAAGGACATTTTTAACGAGTTCTAGGTTAGTTTCAGCATCTGGTACTAATAAGCGGTATAAGGTCTTAGTTCCAAAGCCGGTGTTACTACCTAAAAAGAATGTTTCGTCATTAAGCACGGCTTCTTTACCAAGATAATTAACATCTTTAAAGGGCTTGAGGTAGTAGTCAAAGTATCTCTGCTGACTTACTTTTAAGCCTGGTAAGATTTCGGTTAGACTTTGGCCGTTGAGACTGTAAAAATCAAGTTTAAAGTCAATGCGGACACCAGGTTTAATAAACTCGTATAGATTAGTTTGCT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAGTGATGTATCTCCGCTAATAGGAGTCGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 622395-621772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMJQ010000016.1 Ligilactobacillus agilis isolate MGYG-HGUT-02390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 622394 30 96.7 36 ............T................. CGAGAGAAGCTTAACTTATATAAGTTCGGTTTTGGG 622328 30 96.7 35 ............T................. TATCTTAAATTTAATATCTTTGTATACGTAGTATC 622263 30 96.7 36 ............T................. CATTAGACATGTCGGCCTTATCCAAGGCGCGTTGGT 622197 30 96.7 37 ............T................. ATTCCAGTCGCGAGCACGCCGAAACCTTTGGTTAGGG 622130 30 100.0 37 .............................. TTTTACAAGTGGTATGTGACCAACTTTTTTGGCGTTG 622063 30 100.0 35 .............................. TTAGTAGTCGTCCTCCTCTTCTAAATCTTCTACTC 621998 30 100.0 37 .............................. ATACAGGGTTAGCCCCACGATTGCGATTGTTGCCATA 621931 30 100.0 36 .............................. AATTCATTTAAATGAACTAAGCGCCATCTACCCATT 621865 30 100.0 34 .............................. GACGGTCACACCAAGATTGATAAGACAACTAAGG 621801 30 96.7 0 ....T......................... | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.3 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : AGTTGAATAAACACTGACTATTGATTTGGTGGAGACGCATTTTGCCAATCAAGTGTTAGTGTAGTTAGAAAAAGCCCCTTGGTAGCTAGATGGCGCCAGGGGTCTTTTTTTATGGCATTCTAACCGAACTAGTGTTTATTTTTAGTTTGGAAGGATTTTAATATTGGGAATTATATTATTGAATTTTATGGTATCATTAGTAATGAACCTCTCCTACGTTAATTATTCTAGTCTACTTGGTAGGAGGGGTTTTTATTAGCATACAAGAAAAAACTAGTTGGAAAATGGTTCTATATAGTAACGCTGCGTAATGGAGTATTATATCTGTCGACCTAAGATAGGGTAAAATAGTGATGGTATCGACAGATGACAAAAAGGTTGATATTAAAGGACTTGAAAGAATTTAGGGAAAAAAGTAGTATATAATTGAAGGTGAAATTTGGTGATAGACAGAATGTGTGTGAAATATAGTTGGTAGTATGAGCTTTTGAGGGCGTAGT # Right flank : TTATCTCTTTGATAACATTCGATTATTGTATGTTATCGATGTTATATGCGCAAACTAAGGACCATAAATTCACATGTTGATTGTGATTTTACGGCCTTTTTTTACTGGTGACGCCCAGTTATGTGGTGCTTACTCTATTTTGTATTCTATTTCATATTGGATTATAATTTGGATTTTGTTTTAAAATTCAAATTATATTTTAAATAACAATGTAGTATAAATGATTTATAATTTCTTGATTTATCGGGGGATAAGTGATATATTATTACGCAAATGGAAATTTAATTTTGAGTGATATTAAAAATATTGTTTTAATATCATTATTTATAATTAATGATGGATTTGCTTTTTTAGTAAAAAACTTAGGTGTAGAAATATAAAAATAAGTAGGTGTATTTGATTGAGTGGGGATAATGGTGGGGCAGTTGCCCAAAAAGGTTTCAACTATCAAACTGCTGCTATATCATTAGTTGCTATACGTAATTACAGAAAAGATAACT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : GATTCTATTTAATTTAAGAGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //