Array 1 303006-302619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEH010000007.1 Pseudoalteromonas luteoviolacea strain MMG009 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 303005 28 100.0 32 ............................ ATGTTTTCTGGTTTTACCGCGACTATCTATTT 302945 28 100.0 32 ............................ GATATGCTGTGAAGCAGTAGACTCTGACAATC 302885 28 96.4 32 ......A..................... TTATCGCCATGTTCTTGTTGAAAGTCTGAAAT 302825 28 100.0 32 ............................ AGCTTCAACATCTTTAGCTGCGCGCAAAAATG 302765 28 100.0 32 ............................ TGCTTGCCTTGCTTGCGGTAAGCCAACAAAGA 302705 28 100.0 32 ............................ TATCCAGAGTAAAGCTTCTTGCGCCAGAGTGC 302645 27 78.6 0 ..............GA...T-.C.A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 CTTCACTGCCACGCAGGCAGCTTAGAAA # Left flank : GTGCCAGATGAGGTCAGTTATGTGAGTTTTACGCGAAAAAATGTCAAAAGTCCGGCTAGGGTTGAGCTGGAAATGAAAGAGCGGGCGAAGCGGCGAGCTCAAAAAAGTGGAAAAACTTTCGATGAATGCATGGCTGAGCTAGCTGAGACTAAACCTGAACAATCTAACTTGCCTTTTATCTTTTTGCATAGTCAGCAGACTAAAGCGCGCTCACCAGGCAAAAGCAGTAAGTATCCTCTGTTTATCATCATGCAAGAACGCGAAAGTGAGTCACATGGCATATTTGACTGCTATGGACTGAGCGCAAAAGCAAATGATGAAAATACATATGGGTGTGTCCCTCACTTTTAACAGCTAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTTAAAATCTGTATAAAATACAATGAGTTGTGATAGGCTGTTTTTAACAAGATAAAAATAGGTTTTTTACCTTAATAGTCTGTTGTAACTTATCTTTTTTCATTTATTCTATA # Right flank : GCATTACCGACTTCCATGACGCTAATAATATGCAAAAAATGGATCCTGATTTTCATCAGGATGACGGTGAGCAGTATGATATTTTACTTGATACAGGCAAAAGTGTAATGGGTAGATTGTTCAAAGAAAAGCTACATGTTTGCGGTAAAAGTGCACAGGAAAGATCGGTAAGGATATGTGCCACATTTTAAATCAATAAAAGGGAGTTTTTACCTTTTATTTTTGCTCTTTTAAAATTTGCATAGAATACAAAGAGTTGTGATTTGTTGTTTTTAACAAGGTAAATATAGGTTTTTGACCTTAATAGCCTGTTGCAACTTATCTTTTTTTACTTATTTTATAGTTCACTGCCATATAGGCAGCTTAGAAAAATAGCAAAAATAGTATAAAGCGGTATAAAAAGTTCACTGCCATATAGGCAGCTTAGGTGATGAGTGACCGAAACGAAGTTTCGCAGCACGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 314550-313667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEH010000007.1 Pseudoalteromonas luteoviolacea strain MMG009 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================== ================== 314549 28 100.0 33 ............................ ACAACAAGCCGCAGTTGCCATTGAGGTTTTTCC 314488 28 100.0 32 ............................ AAGCGCCTCAAGGGCGTTTTGGACACGCATGG 314428 28 100.0 32 ............................ AGCATTGCGATTAATATCACTTTCAGTACTGA 314368 28 100.0 32 ............................ CATCTGAGACTCGTTTATTTAAGCCTGAAACC 314308 28 100.0 32 ............................ GTCAACTGACATAGAATGACGTGGTGACATAG 314248 28 100.0 32 ............................ GCCCTGCTCTCAGCGCTGGTAACAACCTATGC 314188 28 100.0 32 ............................ GTTGCAGGTGCGCAGCATTCAATACACCACAC 314128 28 100.0 32 ............................ AGTCATGCGAACAAAAGCCCAATAGTACTGGT 314068 28 100.0 32 ............................ GTCAACACTCACCGCTAACGCGCTATCAGCTG 314008 28 100.0 32 ............................ ACTTAGCGGCGATGGGGTTTAAACCAATCCAT 313948 28 100.0 32 ............................ TTACTAACTGAGCAACAACAATCACAGTTGCG 313888 28 100.0 32 ............................ AAACAGCATATCTGCAAGCGATGCGGCTTGTT 313828 28 89.3 106 .........................GTG ATGAGTGACCAAAACGAAGTTTCGCAGCACGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCTCCGTGTTGGCAAAACTCCG 313694 28 85.7 0 .......A.................GTG | ========== ====== ====== ====== ============================ ========================================================================================================== ================== 14 28 98.2 38 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TTTACTTATAGTAGGGTATGTGTTTGTAATTTATATTTTTTGTGCTAAAAACCGATACTTCACTGCCGTACAGGCAGCTTAGAAATGCTAAAACGCAGCCAGAAATAATTGAGTCTGCTTGCCTGTGCTACAGGCAGTCAAAAAATGTTTCTGACCTTTATGAGAACAATAATATGCATATACGAAACTGCAAAAAATGGATCCTGATTTTCATCAGGATGACGGTGAGCAGCGTGATGTATTGCGGGGATACAGGTCAGGAGCAATGGGCAAATAGTTCAAAGAAAAACAGCATATTTTCGGTGGAGATGCACAGAAAAGACCTGAAAACGTGTGTATCTCATTTATAATCAATCAAAGGGGAATTTTACCTTTGATTTTTGCTCTTTTAAAATTTTCATAGAATACAAATAGTTAAAACTATCTGTTTTTAACAAGGTAAAAATGAGGTTTTTACCTTAATCGTTTGTTGCAACTTATCTTTTTTCATTTATCTTATA # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCACAAGAGGTGAGTAGCCTAGAATAGGGTCATGGATGACCGATGTAGCTGCGCTCCATGAAATTCAACACCGAGCTTTACCTTATCACTACTTTACCGTCATTCACGCTGCTGAGATGATAGAAATCGACACGAAACCTCCAAGCATTTGGATACCGACAGCCGTCATTCCGAGCTTGCCTCGGAATCCATGTTTAAAAGTTTATAACCAAGTACAAAGGGTTTTGCACGCTTTAACTGTAGGCCAGTCATTAAAGATCAAGGTAAACGTGTCTTACTCACTTTCAAGGGGTTGGCCATAAAGTTCATTACAATAAATGATATTGTTAGATAAAAGATGTAGCTGGCGATACAAAATAAGCCAATTAAAAAGGTGGCTAAAACTATCCCAAGCGCTGTAACCGCGCCAAAAATGGGGCTCCAATAAGTGCGACAAGCCAGCCCTTTGTGATTCACAAATAAAGCGCACTGCCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //