Array 1 656647-657342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040420.1 Dolosigranulum pigrum strain KPL3065 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 656647 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 656713 36 100.0 30 .................................... ACAGCGGAGCTTGAGAAGTATCTGAATGGG 656779 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 656845 36 100.0 30 .................................... AATTGACGTTGGTGTGATGAGTGGCTTAAT 656911 36 100.0 30 .................................... GAATATATTAAAACATCAGGACAGGGGTAA 656977 36 100.0 30 .................................... GTCAGACCTCGTCAAGCCATCCATAGCTTT 657043 36 100.0 30 .................................... GTTGACAACTAAATTTAGATCTGATATACT 657109 36 100.0 30 .................................... TTTCTTGTCAAGTACTTTTCTAAAATTTAT 657175 36 100.0 30 .................................... TACAACGCTGCTCTCCCATAAATTCGCACG 657241 36 100.0 30 .................................... TCGCCTAAATCTAAACCGTCAATATCTCCA 657307 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ACTAATCAAATTACTGAACTGATTAATGCAGAGGTACTGAATCATGAATTAGATTTAGAACTTGATGAAATTACAATCCAGGAAGTACTTATCGCTTTAGGAGTGAAGATAGAAGTTGATACAGATACACTATTTGAAAAGATGTTGGAAATTTTTCAAGTCTTTAAATATTTGCGAAACAAAAAGTTACTGATACTTGTAAATACAGCTTCATATTTTACAACCGAGGAGCTTAATGAAATGGCACAGTTTGTCTCATTGTTACAGATGAATGTGCTGATGATCGAACCAAAACTGACTGATGCCAATATTACACAATATATCCTGGATTCGGACTTCTTTTTAACCATCAAACATGGTAAAATGAAGTAGAAGATAAACTAGAAAAATAGGAGTCGTTTAAAGCTGAAGTTTTGCATGGACGAATGGCGCGATTACGAAATTTTGTGCAAATTTCTTTTTAAAAACCATGATTTTTTAGAAAAGAAATACTGTGCGAG # Right flank : CTTGTCCTAGCAGAATACTAGCTGATGTCTGTGAGCTAATTTAGCAGATGATCCCCTTGCTAGACTATGAACTGACTGCTCTTGACGTCGATACACGCGATTAAAAACTGAAAAATTGGATAAAAAAAGAAAAAAAGAAGGCGTTTAAAAAAAGGGGTGTTTTTTATGATCAAGCTTTTTTTAGGAGTTTGACATAACCCAATAAAAAACAGGACTAAGACCAACTGAAAAGTTGGAAAGAAAAAAGACCCAACGCTAAAAGTGCGCTGAGCCTTGTGGTAAAAGCTTTTCTATTCATTTTCTGAGTTTGTCATATTTAGCATTAAGACAAACTGCCACTTTAAAAATTATAAGCTATCCAGCGACGCATAATACTAATAATGCACAATATCGACTACCAATTTTATTTTCTATACTTTATGAATATGGAATTTGCTACATAATTTAATTTTTATCTCTACAGTCCTTTTAGATATTTAAAAATTAAGGCTTGGCTCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 659239-659868 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040420.1 Dolosigranulum pigrum strain KPL3065 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 659239 36 100.0 30 .................................... TGATTAGCTTACTTATTGTTAGGTTGAGAT 659305 36 100.0 30 .................................... ACAGCGGAGCTTGAGAAGTATCTGAATGGG 659371 36 100.0 30 .................................... GTGAGCAGAAGCGATTTGACTTATCGCTTT 659437 36 100.0 30 .................................... AATTGACGTTGGTGTGATGAGTGGCTTAAT 659503 36 100.0 30 .................................... GAATATATTAAAACATCAGGACAGGGGTAA 659569 36 100.0 30 .................................... GCGTGATAGTAGCTTCTTGTCATACATTTT 659635 36 100.0 30 .................................... TATGTTCGATGCCATAGCGGAAGGACGAGG 659701 36 100.0 30 .................................... CCAGAAAATAAAAGAGCTGCGAACGGACAA 659767 36 100.0 30 .................................... AGTCAATTAATCGATATGGAATTATTCGAT 659833 36 91.7 0 ..............................T...TT | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.2 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ATCAACTTTATCAGGCTATAAAATATGCGAAAATAAATAAAAATAATATGAATGATATAAGTTTTGAACAGTTTTTATCATTGTTTAATAGCTATAAATTGTTTAATGGATAAATCTAAAGGACTGCCTGAAAGCAGTCCTTTAGATTTATTTGTTGCATATAATACTACTAATGTTCATCAATTTTCAGTATTGAGTTTTACTCAATTCTTATTGTGACAAACTCATTTTCCCTTAAGTTTTTTAAAGCGTTCTAAACTTTTCTTAAATTTTATTTGAGCTTCTTCTGACATTGTATCATCAGTTTTCACTGGATCAGATGCCCACTCAGGCAAGTTTTCAATTTTTCTCTTACGTTTTTTATATTTATATTTCTTCGCCAGTCATAAAATTAATCATTGGTACTGGATTCGGATCTTCGTATTCTTTAAACCGAATAACGAAGCGTTGAATTTTATTTCCTTTTTTTGCTTTGATTTTTTCAATCGAAAGTTCATCAA # Right flank : TGATTGGTCAGATAACTTATGAGATTTAAAGTTATAGTGTATTGATTTTTGATGTAATAATTATTAATGAAACATATAATCCTGTTTAATCTTCTAGTCAAACTAGCTAATTAGATAGGATTTTTGTTTATTCAGGAGACAAGCTACTTGTGAAGTATTTCCCGTGATTATCAGTCGAAATTGTGGTGGGAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATTGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATAGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATCGTATTGGGGTGGGATGAGCGGTTAGTTGAAGTGCTTGAGTCGGGTGAACATCAATTGAAGTGGATTCAACTGCCAACAGCTGGCGTGGACAAGTTGCCACTTGATTTACTGGCGCAAGAAGGGGTGCGGTTGACTTCAGCAAGCGGGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //