Array 1 169620-171298 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLC01000001.1 Neisseria lactamica strain M37107 M37107_CHA4301A23_cleaned_ctg_2561, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 169620 32 100.0 35 ................................ ACGGGATACCGTGCGGATACAGAAAAAGGCGGCAA 169687 32 100.0 35 ................................ TACGAAGCTCTTTATTGAGATCCAGTTTCCTGAAA 169754 32 100.0 34 ................................ TCATCGTTCGGCTTAAAGCCCAACGCCGCATAAC 169820 32 100.0 33 ................................ CCGTCAAAGCCCAAAGACGGCAGCGTCTGCCCG 169885 32 100.0 33 ................................ TCACCGTTCGGCTTAAAGCCCAACGCCGCATAA 169950 32 100.0 33 ................................ TTTGACTTCGGGAAATCTGCTGTAATCGGACAT 170015 32 100.0 33 ................................ CGGCGGTGCGGTCGGCGTTGCGCCTCAAGTGGC 170080 32 100.0 35 ................................ ATTTTTTGCTCCTATCCGCCCGTAGGCGGTCAGTT 170147 32 100.0 33 ................................ CTTGTTTATCATAAGGTTTTCACATTCTTTTAA 170212 32 100.0 33 ................................ TAAAATGCCCCTGATTTCGCCATTGCCGCCAAG 170277 32 100.0 34 ................................ ATCGGTATCAAAACCCATATCAATCATAAAATTG 170343 32 100.0 36 ................................ TTTAAATGCAACCGCCATTGCATCTCACTTTGGCAA 170411 32 100.0 34 ................................ AATAATGAAATATCGCCTGATACCGCTTGGGAAA 170477 32 100.0 33 ................................ TCCGCAAACACGCATAACGGCTCATAGCTTGCC 170542 32 100.0 33 ................................ AGAAAGAATTTGAAGAATTTGTTAATAACGTAA 170607 32 100.0 34 ................................ ACACTGTCACTGACAGAAAAGGTAGCTGCCATGC 170673 32 100.0 34 ................................ CCGAGAAGCATAAAGAAAAAACCGTGAAAGAACG 170739 32 100.0 34 ................................ GGGGCTTCCGCGCTTCCGGGTGTGAGGTCGGGAC 170805 32 100.0 34 ................................ TGCTTCACTCATTTTGTTCAGTACCTTTAGGGAT 170871 32 100.0 35 ................................ TTCGCGAATTGAGCGAGCAGAATGGGCAGCCTATG 170938 32 100.0 36 ................................ CAGCGCAAGATGTTAAAATCAGAAATCGCCGGACAG 171006 32 100.0 33 ................................ AAGAGAGCGTGCACCTGTTGGCACGTGTTCTAT 171071 32 100.0 34 ................................ CTGTAAAGTCTGTCCTATGATGGAGGTACCGTCA 171137 32 100.0 33 ................................ AGCGCATTATTCCCCGCCAGCGCGCAAAAAAAC 171202 32 100.0 33 ................................ AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 171267 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGAGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAACAGGTTGATATTATCTGCACATATTAATATAATGATAATTATTATTAATCAAACAGGGAAAAAGTAGGGATGTGTAAACTGAATTATGGCGGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCTTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGGCGGAATATCGCAACTTCTGATAAGGATGGCAATGATTTTCCAAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 197447-197746 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLC01000003.1 Neisseria lactamica strain M37107 M37107_CHA4301A23_cleaned_ctg_2565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 197447 36 100.0 30 .................................... GCTGGTTTAAAGTCTAAATCTACGGTTTGG 197513 36 100.0 30 .................................... ACGTGGGTGGAACGGCAGTTATCAGCATAT 197579 36 100.0 30 .................................... GGCCCGCTTGGATAGAAGCGTCATAATGGC 197645 36 100.0 30 .................................... GTTACAATCGAGTTTCCACACAACGACCGA 197711 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGATGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAAGTACCTACGCTAATAGAGATTTGCATTTTGATGTTTCCTGTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //