Array 1 953656-954721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029035.1 Salmonella enterica subsp. enterica serovar Montevideo str. 531954 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 953656 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 953717 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 953778 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 953839 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 953900 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 953961 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 954022 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 954083 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 954144 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 954206 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 954267 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 954328 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 954389 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 954450 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 954511 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 954572 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 954633 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 954694 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970857-972350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029035.1 Salmonella enterica subsp. enterica serovar Montevideo str. 531954 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970857 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 970918 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 970979 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 971040 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 971101 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 971162 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 971223 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 971284 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 971345 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 971406 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 971467 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 971528 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 971589 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 971650 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 971711 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 971772 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 971833 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 971894 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 971955 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 972016 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 972077 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 972138 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 972199 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 972260 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 972321 29 93.1 0 A...........T................ | A [972347] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //