Array 1 183466-181850 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODC01000016.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4821_R1 NODE_2_length_433263_cov_0.852275_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183465 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 183404 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 183343 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 183282 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 183221 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 183160 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 183099 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 183038 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 182977 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 182916 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 182855 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 182794 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 182733 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 182672 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 182611 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 182550 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 182489 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 182428 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 182367 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 182306 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 182245 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 182184 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 182123 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 182062 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 182001 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 181940 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 181879 29 100.0 0 ............................. | A [181852] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 201321-200135 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODC01000016.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4821_R1 NODE_2_length_433263_cov_0.852275_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201320 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 201259 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 201198 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 201137 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 201076 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 201015 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 200954 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 200893 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 200832 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 200771 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 200710 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 200649 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 200588 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 200527 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 200466 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 200405 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 200344 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 200283 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 200222 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 200162 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //