Array 1 1517763-1519743 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065639.1 Salmonella enterica strain FDAARGOS_928 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1517763 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 1517824 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 1517885 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 1517946 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 1518007 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 1518068 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 1518129 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 1518190 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 1518251 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 1518312 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 1518373 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1518434 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1518495 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1518556 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1518617 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1518678 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1518739 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1518800 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1518861 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1518922 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1518983 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1519044 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1519105 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1519166 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1519228 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1519289 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1519350 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1519411 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1519472 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1519533 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1519594 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1519655 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1519716 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1535876-1537413 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065639.1 Salmonella enterica strain FDAARGOS_928 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1535876 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1535937 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1535998 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1536059 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1536120 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1536182 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1536243 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1536304 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1536365 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1536426 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1536487 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1536548 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1536609 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1536670 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1536731 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1536792 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1536853 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1536915 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1537018 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1537079 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1537140 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1537201 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1537262 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1537323 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1537384 29 96.6 0 A............................ | A [1537410] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //