Array 1 81839-81143 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHN01000038.1 Lactiplantibacillus plantarum strain MPL16 Contig_154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 81838 36 100.0 30 .................................... CTTCCTATTGTATAAAGTATTTATTGCTGA 81772 36 100.0 30 .................................... ATGAAGGCAGATTTTGATTTTGGTCGCCAG 81706 36 100.0 30 .................................... TTTACAAAGTTGCTTGATAGGGTGCTTCAC 81640 36 100.0 30 .................................... CTTTTGCCATTACATACCACCACACCTCCG 81574 36 100.0 30 .................................... TATGCAACTCAATAGGAAAATGACCGACCT 81508 36 97.2 30 .............G...................... TTTTTGAGCTGAAGCTAACAATTAATATTA 81442 36 100.0 30 .................................... ATGAGTTCTTAGCATTGCACGGCGCCTACA 81376 36 100.0 30 .................................... ACGTTCTAATGGGTACCAAGTCGTTTATGA 81310 36 97.2 30 ...............C.................... AAGGAAGGTGCCAGATAGTGTCGAGAACGT 81244 36 97.2 30 ............T....................... ATTTTTTCCTGCACTCATCTATGAGCCAGG 81178 36 91.7 0 .C.............C...........A........ | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGTACTATTGAGGTCAATCAGTATTTGACCAAGTTAGAACGGCTGATTAGCGAGTCACTAACAGACGAAGACCGTAATCAGATTCATGATTGCTTAAGTAAGCTGTATTCAGCAGTGGAGCAACAGCTTTTCCTGACAGATTTGCCACTAGAAGTAACCTATGACTTTGACATGAAGCACTTGCTAAAGTTTGCCAAGATTCATTTTGACGAGAAGTGGCAGACTAATCCGTATGATATAATTGAGTCAATATTAAAGGTTCATCAGGAGTGCGATATTGAATCTTGTGTGGTGCTGACCAATGTTACACATTATTTGACTGCATCACAAATGCATGAGCTTGAAGACAGTGTGGTAGCGACTGGACAATCGCTACTGTTATTGGAGTTCTGCAAGATGGATCAACGCGATTACTATGATGTTGGGTCGTTCAATTTTATTGATGAAGACTTTGTTGATTGGTACTAATGGAATGTTAAATTTCGATTAGAGATTAACG # Right flank : AGTAGCATGGTTAATTGCTTTATAAGTACTGTTTCAGAAGGACATTGATTAATATGATTATGCCTTAGCTATCGGTTGATAACTATGCTGTGGGCTTTAGAGAGAATGGTGAGCAGCAACTAGTTGCGAATAATATTTACAGGATAATTACTTTCACTTCGCAATATCCAATCCGTTGCCAATCCCCAAACTGGCGCATGACCTCACTATGAGTGACACAGGCGATACACTGGTAATGCTGATACTTATCAAAGACCGCTTGGACACGGTGGCGAATATCAGCACTAGTTTCGTAGTCCCAGACTTGAGAATCACTAGCTTGACCATGGTTGGCAGTATATTCATCGTAGGCGGCCATTGCTTGACGACCGCTTTTTATTTGCCAGCCTGATTTATCAGGATACCATTCATGAAGGCCTAACTCGACTTGTAATGGTCGGTTATGCCGTCGGATGATTTCAGTTGCGGTTTGCAGCGCTCGAGTATAGGGCGAGGCTAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 90479-90146 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHN01000143.1 Lactiplantibacillus plantarum strain MPL16 Contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90478 28 100.0 33 ............................ CGTACACGCTGAGTTTATTGAATCGTACAACGC 90417 28 100.0 33 ............................ TGACGCCATACGCATCAGCCAGCGCCTTGTCCG 90356 28 100.0 33 ............................ TACGAAGAAATAGAGACACAGTCTTAAACTCAC 90295 28 100.0 33 ............................ TGTTGAAAGTCCCAGTCCCGTCGGTTGACTTTA 90234 28 100.0 33 ............................ CGTGCACGAGAACCCGGATCTATTGGAGGCAGA 90173 28 92.9 0 ...........A..............T. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TTACTGAAAATCGGCGCCCAATTGACCTTAAAAAACTAACTAAAAAACGCGGGACGTTTGCATGGGAATGGATGTACTCAAAGTCCTACTACCACACGGCCGACATGATTAGTCAGCACTACATCCTAGACACAATCGCGAATTTGCTTGATCACGACTTACTTAAAAGTACGCTATCGCAGACACTACAGCCGATTAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGTAAGGTAGTTATTGAAGGATGGGAATGATTTGACGTCATATTGCGGCTCAGGTAATCTACTTTAAATAGCCAAATACGTTGCTGTTTTCTGCTTCGTGGTGCTTACACATGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGCATCATACCTTATAGTCAAAGTAGCGATGAAGTTGCAAGTTAACTAAAATTCGCTGTTTGGTTATTTTGGATTGTTGATTTAATGGGATTTGTTTAGT # Right flank : TAAGTTGTTAAACTTCCCACTCTGAAGCTACGTCGTCCCTAAAATAATTGCGGCCTTTCTCATTCATCGACCAGCATAAAAACTGAAAGCAATAATCCATCGAACCGCTACCTACCACCAATAAGACAAACCTATGATATCAAATTCGCTTACTCCAGCACCGATTGTCGTTAAAACTGCCAAACTTTCTTTTTAAGTTTCCAAAATATTAGTGCTATGATAATAGCATAATTTTGACTAAATTTTTTTAATCGGAAAGGACTTTGAAATTGGCATTTAAAACACCGTTGGCTGATCAAATGCGGCCACAATCACTGGATCAGATGGTCGGACAACAGGACTTGTTGAAGTCGGGCCAGCCACTGCGCCAGATTATTGATCAACACGTTAATATCCCCCTCATTCTGTGGGGGCCGCCGGGAACCGGCAAAACCAGTTTGGCACAAATCATTGCCAGCCAAGACGACTATCCCTTCGTAGCTTTTAATGCTTCGACTGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 94290-94020 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHN01000143.1 Lactiplantibacillus plantarum strain MPL16 Contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94289 28 100.0 33 ............................ TGTGATATCAAGGAACGCGCTAACGGCATCAGC 94228 28 100.0 33 ............................ CACGTTGCCAGACCCACGGCTTATTATCGTTGA 94167 28 100.0 33 ............................ TTACAATGTTTCATAAGTGTCATGGCTAATCGC 94106 28 100.0 33 ............................ CTTCCTCTACCTCAACTCGCGGATTTCGTTTGT 94045 26 82.1 0 ............T.C.....C.--.... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 CTATTCCCCGTGCATACGGGGGTGATCC # Left flank : TAATAATTGCTGCTGGTACAAAAACAACACCACGAGCATCACTGACTCGAATCGCACTATCTTGACGATCAAGTTTGGCATGTTCCAAGTATAAGAAAGTTAATCGGTCATGAATTCGACTCAACTCTGACAATTCTGGCTTTTTTGCTCCAGATTTTTTCATTAGTACTGCACCTCCAAAGTGACTAGCATCAAGTTCACACAGTTGATTCTCAAAAAGTAATTTTCCATGGATAAAGAACATAATGAACTTTTAAATATAGGATAGGGATTGGCCAAACAAAAAAACGCTTACATTGCACTGTAACTCATATATTCAAAAAAACTTCTGAATATCTATATTTCATCAAAATCATTGCAGCTTCATAATTATAATAGCATAATTCATTTGCCAGAAAAAACACATATATGTATACTTATTGTCAGATATCAGATACAAAGTTAACTGAAAATTGCTCATCGGTGCTTCCGTATTGTTGATATGTCAGCATTTCTATAGT # Right flank : ATATTTTAAATAAAGAATCTGGTCAGCCTTTAATCGCACTGTTGGACGCAAAACTGGCTGAGCCTAGCGAACCATTTGCAACATATATTGAAGACGTTACCAGCTATAAAATTTATATTGAAAAAGGTGAAAAAATGTTTGAACTACTCGAGGCCATTATTAACATCATCAAATATCTTGGAATGGCAATTGTATTCGGATTTTTAGCGTATGCTCTAATTTATATAATGATCGGCGTATTTACGATGAATTAGATCCACTACTTTCCATAGCATAAAATGGAATCTTCAGTTACTACATGGCACACTTTGTACTTAACGATTCTTTAATTTAATCCTTCATATTAATAAAAAAGTATTCACGAAATATAGATACATGCAAAATAAATTCAAACTAACTTGCTTGAATTTATTTTTTAGCCTACCTATTTCGTTTTATATTTTAATTCAGCTTGATTATCGCAACATTCCCTTCGATTTTTACGTCATCAGTCAATCAAA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGCATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 96772-96561 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUHN01000143.1 Lactiplantibacillus plantarum strain MPL16 Contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96771 29 100.0 32 ............................. GGTACCCCGTTTTCACGAACGGCAATGTAGCG 96710 29 96.6 32 ............................T TGCATGCAGCGGAACAGATCTAAGTCGCTCGT 96649 28 96.6 32 ...............-............. CAGTCCACGCAAGCGGTTAGCGATTTTTTGCT 96589 29 82.8 0 ...........T..C........A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 CTATTCCCCGTGTATACGGGGGTGATCCC # Left flank : ATAATCATTGTACCGTGTAATCTCTGTTCACTGATCTTACTTTCATTGGATCTTTATTTTAAGTTTCTAGCTGTCTGTAAAATAATTTCAAAAATTAACTATATCTTATATTAACATTTAAATTTTAAAGATTCAGCTTCATACTTAATAAAATATGGCTATCTTTATCTAAACTATTTATGTGAAGAAAAATCGTTGAAACGGTAAATAATTTTGCATTATATATGAGATATGTATTTTACAAGCCTAGCCCTTGTTGTCCACCACATAGTTATTGTTATTCATAAATTTATCGCTTAACATTTTTGTATCACACAATTTGCATGACCTAATAATTTCAATCAGTACTCACAGCAAGTGCAAATTCAATGCTATGAAGACCGCTTTGCTACAATGCCTCCTTGCTTGTATGGTTAATATTAATGGCAACAATCAAGCAAGTTGACTTAAATCTCTCAAGTACTGATTTAATATTGCTGCTATAATAGGCTTTGTTTAGT # Right flank : AACAAAGCCATATAAACAACAAATCACTTTCAAACAAATACAACTCCACAAATATAAAAGTGAATGCTTCACACGTCAGCACGCTACAAAGTCTCACTAAATATTTAAAGAACCGTCTTTAATCAACTTGTGGGCTAACGCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACGATTTGATAAGCCGCTAACACCGTTGACAAGCGATAATTATCTAAGAAAATATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTCTGATTGGTCAATCCTTCTATGTCTTTTTCTATCAATGCTTGCTTCAAGAACATTTCGTCAAAATGAAAATTATAGCCTACGATTACACTGTTACCGATAAAGACCTTCATTTCACTTAACGCCATAACTATCGAAACACCTTCCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGGCAACAATCGATCAATTTTTATTAGTCGGC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 87% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //