Array 1 66539-65384 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGSOF010000003.1 Streptococcus equi subsp. zooepidemicus strain 58622 contig3, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     66538	    32	 100.0	    33	................................	GTACAAAATAGTGTGTTAATATAGTATCATAGC   	
     66473	    32	 100.0	    33	................................	CAGAGATTGATATCCAAAAAACAAAATCCAATG   	
     66408	    32	 100.0	    35	................................	CTACCAAGATATTTGTAACAATCTTGGAATGGATT 	
     66341	    32	 100.0	    34	................................	CTGAAGCAATAGCTAACAATCCCGCTTTACAATT  	
     66275	    32	 100.0	    33	................................	AAGCTTTTATATGGCTGATAAACTGCTTGGAAA   	
     66210	    32	 100.0	    35	................................	AAGGTATTGAGGAAAAAATTGCCACTGGCAAAAAA 	
     66143	    32	 100.0	    34	................................	ATTGCTAACACTAGTAAAATTACCTCGTAGTGTC  	
     66077	    32	 100.0	    34	................................	ATGGTTAATGTCCAAAAATTAAAAGGTGTGATTG  	
     66011	    32	 100.0	    35	................................	AAATCAAGGGTTGAAAACTTTGTAATTTTTGGCAT 	
     65944	    32	 100.0	    34	................................	CATTGAATCGCCAGCTACTTTTGCAATAGTATCA  	
     65878	    32	 100.0	    35	................................	AGCTTTTAATAAGTTGTCAAGACTAACAGTACCAT 	
     65811	    32	 100.0	    35	................................	ACTAAAATATGCAAAATAATGAATAAAAAGGAGAG 	
     65744	    32	 100.0	    33	................................	CTAAAGAGGTGACGGAATGAATAAAAGCGAAAT   	
     65679	    32	 100.0	    34	................................	TCAGAAACAAATAGCTGAACAAATGAAGATTTCC  	
     65613	    32	 100.0	    33	................................	GTGTATCGCAGACATGCATTGCCTTGCGTTTCG   	
     65548	    32	 100.0	    33	................................	TGCGAGATTAACTTACTGCACATGGATTTTATC   	
     65483	    32	  87.5	    36	........C..TGC..................	CTAAAAGACTTTCTGATTTTAACCAACCCTGACAAC	
     65415	    32	  84.4	     0	........CCAT.C..................	|                                   	
==========	======	======	======	================================	====================================	==================
        18	    32	  98.4	    34	GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT	                                    	       

# Left flank :   TAAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAATGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCTTACTTCTGTAAAAGGAGCGAGTGCGAGCCTGGATTACTCATAAAATGCTGGGAGGCTCGCGCTAAAATAAGCTAAAAAATGGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTATATCATTTCTCTATAAACTGTGCTATATTGCGCA
# Right flank :  TTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATTAAGGTGTTCAAAGCTGTTTTGAAGGGGTGATTGAGATGAGGCATAACTCAAAGAAGAGCTCTGTATTCTTTTCTTGCAAATGAAAAAGAGGCAGCTGATAAAGGTCATAATAGTCT

# Questionable array : NO	 Score: 9.18
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [10,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-2.80,-5.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : NA
//