Array 1 739903-739691 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698986.1 Lactobacillus helveticus isolate MGYG-HGUT-02384 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 739902 29 96.6 32 ............................C ATTAGGAGCTTTCCCGAATAGAAGATACGAAG 739841 29 100.0 32 ............................. TACTTAAAATTATGCACTACTGGAGGCATTTA 739780 29 100.0 32 ............................. TGTCTATTTTTTCTTTTTGCGCCTCCGTGGCT 739719 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CCTATCTGGGTTTACAAAATATATCCTCGTTATCCGATGTATAAAACAAAATATGTAAAAGCATATAAATTAAAGCCTGGAGACACACCCATAGTAAGACATCGTGGTGTTGACTGGGGTTGGACCGTTGGAAAGTCTTATCGTTATTGTATTTTAAAAGACAGCTTTTCTTGGTTTGATGGCTATTCAAAATATAAATGGGTTGACCAAGGCTTACTTGATGGCTCTATGAAAGATGAGCATTTTGCCTACAAATTCACTTGGAAACAGTATTGTCAATTAATTAAAGCCGGTATCTACACAACAGTACATCCAAAGAAATTATGGAACTCCAAAATTAAGAAGATGATTGAAAGATGGAAGCCTGAGACTGATAACAGCTAATAAAAAAGCCCGCCTACTCAAACTAGCAGACGGGTTGTATTTAACACATTAAAAGAACACAGGTTCACTAAAAAGGAGGTGAACACAATGCCAAAAAGAAAAAAATACCGCTATTA # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCACATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCAATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 870060-869436 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698986.1 Lactobacillus helveticus isolate MGYG-HGUT-02384 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 870059 30 100.0 36 .............................. TAGTATTTTAGAAAGAAGACTTATGTCAGTACCTAA 869993 30 100.0 37 .............................. TTGATCCGGCTTGCTAGGTCTCAAAAAATCGTTTTTA 869926 30 100.0 35 .............................. ACACAAGCAATTATTAACGTGCCAGCTTTAAACTT 869861 30 100.0 35 .............................. TTAATTCTTACTAACTTTAAACCTTACGCTTACTA 869796 30 100.0 36 .............................. ATCGTAAAAACTCATATCTTGCGCCACCTTTTCATT 869730 30 100.0 35 .............................. TAATTCAGGTGGTAACGGAATGCTTGAACCCATTG 869665 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 869599 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 869531 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 869465 29 80.0 0 .A......C..............A-...TT | T [869445] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 95.3 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : GTTCCACCGTTTCCTTGGCATCATGGACTGAGGCGCGGGTTACGGCATAATCAAGAACATAGCCGTCGTCGCTGACAATCGCATGAACTTTGAAACCATAATAGTAGATCTTTTTGGTTGCCTTATAGCCAATATTCGCAGAACCTTCTTTGTGATTCGATTCCAGTCTTGGCCTGCTAGATAAGCAAAGCCAAGATTAAACTGTCCGTAGCTTTTACTTGGTTGATGTTTCGCCGTTGACTAAATTCAGCCGGAGCAGATAAACGATACCAGTACCGGCAAATTTTGACTAAATCCTTAAAACCAACTTGTGTTAGGATGACTAAAACGCTTAAGCTTAAGGCAGTTCAATCAGATCAGACTCTTTTCTATTGAATACTACAACTTGAGTCTAGTCCGATTGGACTTTTTTATTAACTAAAACGATTTAACTAGCACCACGCGTAACTTAATAGAAATGTAAAGATGCTAAGCGTGAAAATATTAGTAAGACACGGTAT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATGAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 870938-872284 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698986.1 Lactobacillus helveticus isolate MGYG-HGUT-02384 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 870938 30 100.0 36 .............................. CAGCACAAATTAAATCTGCAAAGGCTCATGGTCTTA 871004 30 100.0 35 .............................. ATTAGTAGTGGCAGCTTTCCAGTTGTCATTCATTC 871069 30 100.0 35 .............................. GGTGAGAGTGCTGCTAACATCCAATCACTAAATGA 871134 30 100.0 36 .............................. TGATGCCATAAAAATTGACTATTTGTGCGGTAGCGA 871200 30 100.0 36 .............................. TACTTCTCAATCAGCTTTTCAGCATCTTTTTTATCT 871266 30 100.0 37 .............................. GCGATCACTGGACTAAGCACAAAACCACTTCAGTTGA 871333 30 100.0 35 .............................. ACTTCCGAAGTACCATTGCCACCAGCCACTGCATG 871398 30 100.0 36 .............................. AACGGCATAAACCATTGAGTCGACATTGTCATCGTG 871464 30 100.0 36 .............................. AAGCTCCATTAATGCTGACTTAATCCCCCATGCAGT 871530 30 100.0 37 .............................. TTATCGGCTTACTGGCTGGCGTAGATTTGATTCTGTG 871597 30 96.7 36 ...............C.............. TACTTTCACCCATTGTTTTAGCAACGGCAGAAATAC 871663 30 100.0 36 .............................. AAGTGCCCCTGCGCGCTTATATGCACTCATGCTAGT 871729 30 100.0 35 .............................. TTTGCTCACAGCCAGGGCTATGCGATTGATTTTTC 871794 30 100.0 35 .............................. TCCGTCGAAGTATTTCATAGCATCGTCTTTCCAGA 871859 30 100.0 37 .............................. TCTCACCGTCAACCACAGCAGAAGTCGGGCCATTGTC 871926 30 100.0 37 .............................. GATCAGTAAACTTAATTCCGTCTAATCGATAGTAGAA 871993 30 100.0 35 .............................. CAGAAGTTGTTGTTGAAGACTTTTCATTTTTAGGT 872058 30 100.0 37 .............................. GAAGAAAGTTAAAGAAATATCGAAAAATGGTAAATCA 872125 30 100.0 35 .............................. CTTTTAGTAGTAACCACAGAAGTTAAATAATTAGA 872190 30 100.0 35 .............................. CTTTTAGTAGTAACCACAGAAGTTAAATAATTAGA 872255 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.8 36 CTTTACATTTCTCTTAAGTTAAATAAAAAC # Left flank : GGCAACCAAAAAGATCTACTATTATGGTTTCAAAGTTCATGCGATTGTCAGCGACGACGGCTATGTTCTTGATTATGCCGTAACCCGCGCCTCAGTCCATGATGCCAAGGAAACGGTGGAACTAATGAAAAATACTCATCCAGCCAATCGCTATCTGCTTGGCGATGAGGGCTATGTAGGCAAACGATTGCATGATCGATTAAAGCAAATGGGCTATGAACTGTGGACGCCATATCGGAAAAACATGGCTGGCGCCAAAAAGCACGATGATCGTCAATTGATGGCTATTCGCAGAACAATTGAAAGCGACTTTTCACTTCTAACTTATTACAACGCCGAGAACAATCGAGCGCGCAGTTTAACTGGCTTTCAAGCACGATTAGAAATTGCTATTCTGACTTGTAATCTAGCTTATTGTCTAGAACGATTTAACTAGCACCACGCGTATTAAGTTAAATAAAAACTCAAATCTAATTATTGATGATATTGAAAATAGAAGA # Right flank : CAGTTGCAACTACCAGTCCTACTGTATCAATAGATTCAACGGCCCTATCTGTCGACCTAACCAAAAACGCATCCAAAAATCACTAAAATCATTAGACAAATCGCACAAATATCATTGTACCGGCATTTTGCAAATCTGTCGATCTCCCAGGATTTTCTTCGTATCTTATATCGACAGATTCTTCTTTAGAATATATCCGACGTTAAATCAGTTAAATCCTGACCCATAAATTCTTTATCAAGCCAATCTTTATTTCTATTTTTGAATATAATCACTGAATCAACGTTCTGTCGAATCCATCTATCCAACTCATTCTTCAAGCTTTCAAGCTGGGACTTGGTTAGTTCACCTTCGAATACTGAATTTTGAACATGAGTTAAATACTTTTTACATATTTTGAAAACATGTCTACTTACTTTAGCACCTTGTTTATCCATTACGATATCGTAAACCAGAATCACATACATATCTATTACCATCCCATAACATAAGGCTCATAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTTCTCTTAAGTTAAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //