Array 1 654165-652766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXF010000001.1 Listeria marthii strain FSL L7-0368 NODE_1_length_907752_cov_88.309528, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 654164 29 100.0 36 ............................. TCTGATGCGTATAGCTTAATGTTCGATGTGCGTAAC 654099 29 100.0 35 ............................. TCAACATTGACTCTTTATGTCCGACAAGCATCGCA 654035 29 100.0 35 ............................. AACGAAAAACAGTCAGGAAAAACATTTGATTATAT 653971 29 100.0 37 ............................. TTGATAGAACACCGCGTAAAGTAACTGTGAGAGTAGC 653905 29 100.0 36 ............................. GTCAAGAGAGGTATCAGGCTAGGCTTAGTAAGAAAG 653840 29 100.0 36 ............................. TACATATGAACACCTCATTTCTTATATATCTATTTT 653775 29 100.0 38 ............................. TTTTTTAAGGATGTTTTTAACATTTACATTTGCCCAAA 653708 29 100.0 37 ............................. GATTTAGTAAGAGAAGGATTCTATTCTGATATAAAAA 653642 29 100.0 36 ............................. AAAATTTCGGCAGAAAAAGCGTTGGGCCTAAAAAGT 653577 29 100.0 36 ............................. TTAACTGATTCTGTGATTTTTTCAAAATCAGCTTGA 653512 29 100.0 37 ............................. AAAATCAGCAACTTGGGGAGATACTGCAGATACAATT 653446 29 100.0 35 ............................. TTCGTAATGTTAAATTTGAGATTAAGATTATCACC 653382 29 100.0 37 ............................. TTCGCACATACGTTCTTTTTTCGGTAAAAAGAAAAGC 653316 29 100.0 38 ............................. TCTAAAAAATCTATTGTAAATTCCATTAAAATTCCTCC 653249 29 100.0 34 ............................. ATATTAATACCGCAGTAAAATTAAGCAATATTGG 653186 29 100.0 36 ............................. CTCATGAACTCAGAACTACAGCAAGACTATAACGAC 653121 29 100.0 37 ............................. AAAAGAACGGCTAAAAGAATATTGCATGATTCGAGGA 653055 29 100.0 37 ............................. CCTTCTAGATTAGTTAATCTATTTAATACTTGATTAT 652989 29 100.0 36 ............................. TCAGGAAGTAACACAAAACTACTCTCACGCTCAATT 652924 29 100.0 34 ............................. ACGCTTGAAATCAATGGTAAAGAATATGAACTGA 652861 29 100.0 37 ............................. ATATATAACAACGTTTCTTTTTGGTCTTTGTGATTGA 652795 29 86.2 0 ...............C......CC....C | A [652770] ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATAATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCAGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAATTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGCGACCTGAGTTATGATGGGAGTAGGCCTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACGAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCTCCAGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAGATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 669899-669094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXF010000001.1 Listeria marthii strain FSL L7-0368 NODE_1_length_907752_cov_88.309528, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 669898 29 100.0 35 ............................. CTTTGAGAATCAGAAGCAAGCCCCTCAGTCCCAAC 669834 29 100.0 35 ............................. ATCCAAGTAACGCCGCGCGCCGGATTTCCTAATTC 669770 29 100.0 34 ............................. GGCGAACCGGGCGGGCAAAAGTTTTTCACGCAAC 669707 29 100.0 34 ............................. GCTCTTCGTATAATATTTTATTGAGCTTATGTGC 669644 29 100.0 37 ............................. TATTCCTGAAACAGATGTTGAATTTGATGAAATTGAA 669578 29 100.0 36 ............................. CCGAAGAGTTTAGGGGCCACCTCAAAGGCTGCATAT 669513 29 100.0 36 ............................. ATTTTAGTGCTATCGAGGCACGTGTTATTGCGTGGC 669448 29 100.0 36 ............................. TCCAGCTTGAAAGACGGTTATGTGAATTGTGCTGTT 669383 29 100.0 35 ............................. ACCCATGTGACATAACATTGCCTCCTACTAATTAA 669319 29 100.0 37 ............................. ATGCTTTTTCGATGATTGGTACAAGTGATGGATCTTC 669253 29 100.0 35 ............................. GTCGCTAGGGCTAAAAAATGGATTGAGGAACAACA 669189 29 96.6 37 .......T..................... CCTTTATAATTATCACCAATATGCGCGAATGTCTCCA 669123 29 86.2 0 .......T......A.A......A..... | A [669099] ========== ====== ====== ====== ============================= ===================================== ================== 13 29 98.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCCAATATCAAAGAAATCATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATTGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTGAGTAGTGTGAAAAAGGCTGGGTATCGACAGAAAGGTGAGAGTGATTGGCGTGGAGGTAGTTTGGTGGTTTGTGCTTTTGAAAACCATGTAGAGAAGGGTGGATTTTTGTTGGTTTTTAGTTGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : GAGAATTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAATCTCCAACTACACCACACACCAAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //