Array 1 118653-117281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECNX010000001.1 Salmonella enterica strain S72 S72_contig000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118652 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 118591 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 118530 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 118469 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 118408 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 118347 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 118286 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 118225 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 118164 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 118103 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 118042 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 117981 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 117920 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 117859 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 117798 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 117737 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 117676 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 117615 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 117554 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 117493 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 117432 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 117371 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 117310 29 96.6 0 ............T................ | A [117283] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136311-134939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECNX010000001.1 Salmonella enterica strain S72 S72_contig000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136310 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 136249 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 136188 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 136127 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 136066 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 136005 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 135944 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 135883 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 135822 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 135761 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 135700 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 135639 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 135578 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 135516 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 135455 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 135394 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 135333 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 135272 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 135211 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 135150 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 135089 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 135028 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 134967 28 93.1 0 ............T............-... | G [134947] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //