Array 1 544894-547335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPZN010000001.1 Bifidobacterium ruminantium strain MSK.5.20 NODE_1_length_547335_cov_528.348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 544894 36 97.2 41 A................................... TTCCCCCCGGTCAGACCGTCCGGCGTATAGAATTCCACGTC 544971 36 97.2 39 A................................... GACTACACGCGTCGCGTGGGTCGTGCGTCCGTTCGTCGT 545046 36 97.2 35 A................................... GATACGGGCGCTTCTCAGGCCGGTTTGCCGGTCAC 545117 36 97.2 36 A................................... CCGACCACTCCTAGTCCGTTGCCGACAGCCAGTTGG 545189 36 100.0 36 .................................... TTGAAACTGAAAGGAATCAAACGAGCGCCAAGAAAA 545261 36 100.0 40 .................................... TTGATGAAATGGAACGCGGTTTAATACCTGAAATCGATTT 545337 36 100.0 36 .................................... CCAGCATTTCAATCAATTTCATGTACTGGTTGATTC 545409 36 100.0 39 .................................... GGTGACGGCGTGAAAATCGTCGCGTGGTTCGTTCGGCTC 545484 36 100.0 42 .................................... TTGTTCAGGTGCTTACGCGGCCGGACGATGGCGGCACTTCCC 545562 36 100.0 39 .................................... CGTCTCTTTCCTGTGCTGTTCCACGTCGGTGCGTCTGAG 545637 36 100.0 34 .................................... ACACGGCCAGCATCGTGGTCATCGCGCTCGACAA 545707 36 100.0 35 .................................... CCGGCCTTCCAATGCTCGGCCACGTACTTGTTGGA 545778 36 100.0 37 .................................... TCTGGCCGGGCGCGTTGGACGCGTTGGCAACCGGATT 545851 36 100.0 35 .................................... TTGAATCCTCGTACCGTCCTGTGGTCGGATTGTAG 545922 36 100.0 35 .................................... TTGATCTTTTCGGTCAGCACTTTGGCCGCCTTCTT 545993 36 100.0 36 .................................... GTTGTTGATGTAGTTGTACGTCGTAGCCAGATCCGT 546065 36 100.0 34 .................................... GCGATATCTCCTTTAGCGAGGATGATACGCGCTC 546135 36 100.0 34 .................................... TCGGCTTGCTGACGGTGATGTCGAAGCTGAACTC 546205 36 100.0 33 .................................... TACGTGCAACGAAGTGCGTGCCCTCGCTAAGGA 546274 36 100.0 34 .................................... TTTTATCGTCTTCGTACTCTTTCGGGTATCCCGC 546344 36 100.0 40 .................................... CCGACATGAGTGCCGCAACCTGAGCATTATCGCTCGCACT 546420 36 100.0 39 .................................... GGGCTTTATCGTATCACGTACAGGAGCGTGAAACCGATG 546495 36 97.2 38 .........................A.......... GTATCGAGAAGGTTCGCATTGGCGGTTGGATTGTCGTA 546569 36 100.0 38 .................................... CACTACGGATATCACCGCACTATCCACCTCGGTAGGCA 546643 36 100.0 38 .................................... GCGAGACGTGCACTGTCACCGTCAATAACAAGCTGACA 546717 36 100.0 37 .................................... GTCAACCACTGTTTTCTTCGCATGGTACTTGCTATCC 546790 36 100.0 37 .................................... CGGCAGACTTCGCGATCGTCAAGGTCAACCAGGGCTG 546863 36 100.0 37 .................................... CGAAGAAACCGCACAGGCAGACGAAAAGGCCTGCGAA 546936 36 100.0 36 .................................... GTCGGCGATTCCGTTGTATTCGTCAACAAGATTGTT 547008 36 100.0 37 .................................... TCAACCATGAACGGAATGGCACGTCATCGTTCGACTC 547081 36 100.0 35 .................................... TTCGTTTTCTGCTCGGCATACGCGTCATCTCGCAC 547152 36 100.0 39 .................................... TGCCGTCTGCTTATGCGGATATGCGCGGCATAGACGTGA 547227 36 100.0 37 .................................... CGGCAGACTTCGCGATCGTCAAGGTCAACCAGGGCTG 547300 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 34 36 99.6 37 CCCTCAATGAAGTCCTAAGCATGAAGGCTTAGGAAT # Left flank : AGTCAGAACATGCCAATCGGACTCTCCTTCGCCGGCGCACAAGACAGCGAGCGAATACTACTAGGCCTCGCTGCCGCCTATGAGAAGATAAGTCCGTACAAGAACGGCGACGGTCTGGAGCTCGACTGATTTGAAAGAACAAAGTGGGTTTGCCTCACCATTGGAGCAAACCCACTTTCGGTATTCACATTAATGGGATGAATCAATCAGTTTGACTTCTTCGGCGCGCTCTCCGTAGGTGAGCATCGTTGTCGAGCAACCATTGTCGGTCACGGCAATCGAATTGCCAATGCAGGTCCAACCAGCCCATGCTCCATCAACAACTGGACCGATATTGCTAACTGAGAATACATCCACCCCGAATTTTGATGAGAGATGGCGGAAAGGCATCTTCCACTCCTCTCCATATGCTTCTCCTAATCGTTCAGGAGGTACAGCCCATGACGATGGTGCGAGAATCATCTTGGCGCCCATTTTCGCCATGGCTTCGCCAAGATTCA # Right flank : | # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAGTCCTAAGCATGAAGGCTTAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 20-3332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPZN010000007.1 Bifidobacterium ruminantium strain MSK.5.20 NODE_7_length_104557_cov_549.039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 20 36 100.0 36 .................................... TGGTGTGTACCTGCTTGCGTAGGCTGAGGCTGGCTT 92 36 100.0 40 .................................... TGTAGTGCAAGCCGGTGACACGGCCCACGGGTTGCCCCTT 168 36 100.0 35 .................................... TTGCCTAGGCAGTGTACGTGAACTCGACTAACAAT 239 36 100.0 36 .................................... TCCCTCATCGGTTCCTCCCTTGACCTTGATTGATTG 311 36 100.0 39 .................................... ATTGCGCGCGTACTCCGCAAACGTCTGCGTCTTCATCAA 386 36 100.0 35 .................................... TTCACGCCATAGATGAGGCCGGAACGGTGCTGCGA 457 36 100.0 38 .................................... TTGCACAATTTAAAACGTGTGTTCGGCGTCCATTTCGC 531 36 100.0 35 .................................... TGACATTACTTTGCGATATCTCTAAGTACTTTGCG 602 36 100.0 35 .................................... TCAACGGCAGTTGGTGGAGCGGAACGTCCGGCCAT 673 36 100.0 35 .................................... CATGAAGCACTGCTGCATCATGACCTCCTTGCGTC 744 36 100.0 39 .................................... TGTCAGCAAAGGAGACCTCATGGCCTACACCATCCGCCA 819 36 100.0 36 .................................... CGCATGGCTTCATTCATGGCGCTGGTCATGTCTTAC 891 36 100.0 38 .................................... GACAAGTGGGGCGGCATCCACGCCATCACCGAAGCCGT 965 36 100.0 34 .................................... TTTTTCATTTCCTTTCATCGAAACCGATACCTAT 1035 36 100.0 39 .................................... TAAGGCCGCGCGTCTATTCCGACGTTTCCTCGAAAACGA 1110 36 100.0 36 .................................... GGCCGCTTCCGACCTGGACAACTTATGATCGAAAAT 1182 36 100.0 38 .................................... CTGCTTTTGCCTTCCGCGACGGATACGGCCCAATGCTT 1256 36 100.0 35 .................................... ACCGGTTCCATGCCGTCCTGTCTCAACTATGAAGA 1327 36 100.0 38 .................................... GCCGATGCCGAAGCCAAACATGGCGCTAAGCCATTTTC 1401 36 100.0 34 .................................... CGCAGCGTTTCGCCGTCTCCAGCCATTCGGCGGC 1471 36 100.0 37 .................................... ACTCCAGGATACAGCAGTAGTTCCGGTGTCATAAGGA 1544 36 100.0 39 .................................... CTTCGGTAGCTCAGTGGCAGAGCGCAAGGAACGGCACAG 1619 36 100.0 36 .................................... CACTTGGTGTCATGATCCTGTTCGATTTTGTTGCGA 1691 36 100.0 36 .................................... ATGACTTGCGTGCCATGTCGGAATTGCTCGTACGGT 1763 36 100.0 35 .................................... TCGGCTCCAACGGCAGCGGGAAAACCTTGTGCATG 1834 36 100.0 37 .................................... TGCGCGCGTACTCCGCAAACGTCTGCGTCTTCATCAG 1907 36 100.0 38 .................................... ATGGTCAGGCTTCTGGCGGTGCCGTTGAGGTCGGTCTG 1981 36 100.0 36 .................................... TTGCACCTGTGCGTTGATGCCCGCAATCGCGTTCTC 2053 36 100.0 35 .................................... ATGAACGCGCCTATCCTCAGCGATAGGAACGACAT 2124 36 100.0 37 .................................... CACTCCAACCGTCGAGGATCACAGTCTGACCAGAACG 2197 36 100.0 37 .................................... TCGTTGATACGAAGACGTATCCACAACGCAAATCAAT 2270 36 100.0 36 .................................... TGCAATCACGTTGCCGTTGTGTACGGTTTTCAGCTT 2342 36 100.0 38 .................................... CAGCAGTTCGAGACATCGGCATCGGATGTGTGGATCTT 2416 36 100.0 37 .................................... CGTTAGCGTCGCTGTATGTGACTTCCTGCGCACGCAC 2489 36 100.0 40 .................................... CGGGTTCCCAGCCGGATAATATACACCCGTCAGTGTTTGC 2565 36 100.0 36 .................................... CGCTTCAGCCACCGCCTGAGTATCTTGGCCGGGCTA 2637 36 100.0 36 .................................... CAGTGCGCGGCCTTGCGCGCGTTATTGCGTTTACCC 2709 36 100.0 37 .................................... ATCTGCCTGAAATGCGGCAAAGCTTGCGAATCAACCA 2782 36 100.0 36 .................................... CGGTTGGATACATTCGTGGACTTGCGGGGGTTGCTC 2854 36 100.0 39 .................................... CACGTCCTGCGGAATCTGCCACACGGCGGATGATTGCAC 2929 36 100.0 40 .................................... CTGGAAGCTCTGCCACACGTCCAATTGGATATTGAGCTGA 3005 36 100.0 38 .................................... GACCTTTTGCACACGCTGTAAGTACGTGGATCTGTCAT 3079 36 100.0 37 .................................... GGGAAGTTTCGAAAGAGTGTATTCAGAAATATAGTTG 3152 36 100.0 37 .................................... ACAACCGCAAGTCAAACAGATTCGACAGGCAACACAC 3225 36 100.0 36 .................................... CCTCCTGTGCTTTTCTTCCCATGCTTCAAATTATAG 3297 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 46 36 100.0 37 CCCTCAATGAAGTCCTAAGCATGAAGGCTTAGGAAT # Left flank : TCAAGGTCAACCAGGGCTGC # Right flank : TAGTCATACTATAAAACACTGCAATGACACGTATCTCAGAGCTTTTTGCGAGAGGTCCTTCCCTCGTCCAGATCAGAGACACATCCCCAGAACACTCTCACGCATAAGACCTATTGTTCTTAGGTGCGAGCGCTCACCGCGTGTCACAGAAACGATTCAGCACTCGCACCTAAAAACAAACACTCTTCACTTATCAAGCGACATAGCTATGTTGAGCTAAGAATCAAATCACCGTTGGTATGTCTAAATCCGTATACCCACGATGTCCCAGGAAATCCAATCCCTCTTCCGTCTGTGCAATCGTCCCCAAAGAACAGAACACAACGGAATCAGTTGAACCATCAATTTCCTGTTCAACTTGCATGCGAACATCAAGCATCATCGAAGGTCTGACGCGCAATAGAAACACACTGTATTGCAGACGCTCCCCATAATGCTGAAGAATCTTCGCGATATGTGAACGACGATAATCGTCGCTCACATCGTATGCGACTAAATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAGTCCTAAGCATGAAGGCTTAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 27962-28189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPZN010000008.1 Bifidobacterium ruminantium strain MSK.5.20 NODE_8_length_104453_cov_651.63, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 27962 24 100.0 27 ........................ CGCAAAGTGCTGCTGGAGTGCCTTGGA 28013 24 87.5 27 ......T..T.C............ TTCGTGCATGCAAATTGGTGCCCTGAG 28064 24 100.0 27 ........................ AATATGCACCCTGAATATGACCCCACG 28115 24 95.8 27 ......T................. TTTGAAGTGCTGCGGAAGTGCCCTACG 28166 24 95.8 0 ...........C............ | ========== ====== ====== ====== ======================== =========================== ================== 5 24 95.8 27 TGTCCGATTCTGCAGAATCGGACA # Left flank : TTCGTGGGGACGGCGCTTATTGCGACGGGTGGCGATTTCACCATGCTGAAGCTTCCGCTGATCGGTCTGGCATGGGGATTGATGAATGCGCTTTCCACCGCGGCAATGTCGATTCTTCCGGTGGGATTGATGGCGAAATGGGGCAATTTCACGGTGAACGGCATCACGTTTATGCTTTCCGGGCTTGTGTTATTGCCGTTCGTGCGACCGTGGGCCACGGCTCCGCACTTGGATTGGGCGGGCGTTGGACTGATGGTCTTCACCGTGGTCGGCGGCACGTTCGGTGCGTTCTGGCTGTACATGACCGGTGTGATGCGCGTCGGCTCGATGCGCGCCACCATGCTCGGCACCAGCGAGCCGGTCATGGCCACGGTCTCCGCGGTGGCTTGGACTGGAGCAGTGTTCGAGCCCACCGATCTGGTCGGTTTCGTGATGATCCTCGTCATGGTGTTCCTGGTGCGCTGACCGCGCGTCCGCTTCTCGCATACCCAATACTTGCG # Right flank : AAACTCGCTGACCGCTCCCATGCCCCCTATTCCTGATTGTCCTGCTCGTAGATGCCGGTGGTGATCTGCTCGCGAAGCCGGGCGAAATCCGGATGCGCGCGCATCTTCTCCATATTGTCGGGATCGTCCGGATTGCAGGGAATGTTGATCGGAATGTCCATTTTGATGGTGCCGGGATGCGCGCTCATCACGATCACCCTGGTAGCCAGGAAAATGGCCTCGTCAACGCTGTGCGTGATGAAGAAGACGGTTTTCTTCTTTTCCTCCCAAATGCGCAGAAGCTCGTTCTGCAGGTGCTCGCGAGTCAGTGCGTCCAATGCGCCGTACGGCTCGTCCATCAGAATCACATCGGGGTCCGTGGCGAGCACGCGGGCGATTTGCGCGCGCTGCTGCATGCCGCCGGAAAGCTCGTACGGGCGCCGTTCCGCGGCATCCTTCAGGCCGACCAGCTCAAGATAGTGTTCGGCGATCTGTGCGCGCTCCGCAGGCTTGACTCCCTG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //