Array 1 4926-5260 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRB01000260.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_3987 NODE_260_length_5314_cov_1.05644, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4926 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 4988 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 5049 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 5110 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 5171 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 5232 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GCTGAAATATTGCTATTTCCGAAGGGGCTGATGTGTTCCCCGCGCCAGCGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4425-4575 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRB01000285.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_3987 NODE_285_length_4591_cov_1.16541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4425 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 4486 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 4547 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTGATTTTAATGGCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2624-1558 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRB01000368.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_3987 NODE_368_length_2660_cov_0.981733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2623 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 2562 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 2501 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 2440 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 2379 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 2318 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 2257 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 2196 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 2135 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 2074 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 2012 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 1951 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 1890 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 1829 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 1768 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 1707 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 1646 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 1585 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTCGGCTCCCGCGGGCGCTCCTGTTGGCCAGCATC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-916 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRB01000463.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_3987 NODE_463_length_959_cov_0.75344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 95 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 156 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 217 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 278 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 339 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 400 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 461 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 522 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 583 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 644 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 705 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 766 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 827 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 888 29 93.1 0 .............T..............C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCCCAATTGCCGGCGACGGTTTCCATGTCAGCG # Right flank : CTTGTTAAATACAGGCGGCGGCGGGGTTGGTGTTCCCCGCTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-715 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRB01000344.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_3987 NODE_344_length_3242_cov_1.15436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 36 29 100.0 32 ............................. AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 97 29 100.0 32 ............................. CAGGATTGGATTAATGAAGACGGGTACGAAAT 158 29 100.0 32 ............................. AGATTGCAGAATTATATTTCACGCTGGCAGCA 219 29 100.0 32 ............................. CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 280 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 341 29 100.0 32 ............................. GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 402 29 96.6 32 .............C............... TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 463 29 96.6 72 .............C............... CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 564 29 96.6 32 .............C............... TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 625 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 686 29 89.7 0 A...........TC............... | A [712] ========== ====== ====== ====== ============================= ======================================================================== ================== 11 29 97.8 36 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : AAACCCCTTGTTAAATACAGGCGGCGGCGGGGTTGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //