Array 1 288600-286189 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028290.1 Acidovorax cattleyae strain CAT98_1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 288599 36 100.0 30 .................................... GCGTGTCCAGGTCCGCACATGCCAACGTGT 288533 36 100.0 30 .................................... AGCGATGAAACATTTGATGGGGCCGATCCG 288467 36 100.0 30 .................................... CCTGCCGATGCAGGCCCGCAAGCATTACCG 288401 36 100.0 30 .................................... TCCATGCGCCTCCACATGGCAACCATCATG 288335 36 100.0 30 .................................... GCACCTCTCGTCCCTCCGTGGACAGCGTCC 288269 36 100.0 30 .................................... ACAGGGCACTCCCCACCGCCTACGCTGGCA 288203 36 100.0 30 .................................... CCGGCCAGGCCTCAAGACCGCAAAGCTGGA 288137 36 100.0 30 .................................... GTACTCGCCCATATGCAGGAGAGCTTCCCA 288071 36 100.0 30 .................................... GCGCACGCTTCATGCGACGAACCCACTCTT 288005 36 100.0 30 .................................... CGGGCCTATACGGCGGTCTCTCAGGTCTGG 287939 36 100.0 30 .................................... CTCGAAGACGAAGTGCCGCGAGTGACCTGT 287873 36 100.0 30 .................................... TGTCGTCCCTGTCGATATCAACTCTCCCTA 287807 36 100.0 30 .................................... GACGATGTTGTTGCCGATCATGTCGAGGGG 287741 36 100.0 30 .................................... ACTCGAACTGCAATCGCCTGCAGTCGCCCA 287675 36 100.0 30 .................................... GTATTTCAACAACGGCACTGGCATTATTGT 287609 36 100.0 30 .................................... CCGCCTCGAATCGAACCCCATCCCACCAAT 287543 36 100.0 30 .................................... CCCCGACACAGGCAGCAGGCCACAGATGGA 287477 36 100.0 30 .................................... CGCGCATGGTGGCGGCCATCCGCCGTTCAG 287411 36 100.0 29 .................................... CTCGTGAGTGAAAACCAGCTTGCGGGTGG 287346 36 100.0 30 .................................... CCAGCCGGTATCAGGGGCAATGGCGATGAG 287280 36 100.0 31 .................................... AAAAACCGCTGTGCCGTGCGGTAGGCCCCTG 287213 36 100.0 30 .................................... CAGGCTCTGCAGCGGGTGCTGCAGGCATGC 287147 36 100.0 30 .................................... GCGCGCATGCGGCGGCCGGGCCTGCCGCGC 287081 36 100.0 30 .................................... CTTGCGGCTGGCTTCCTGATAGGTGCGCCA 287015 36 100.0 30 .................................... GGCAAGAATACATTTGAATCATTGCTTCCA 286949 36 100.0 30 .................................... GCGATGGTCGGTCAGCACGCCGTCATCCTT 286883 36 100.0 30 .................................... GATCGTGCCCGCGTTGACCGCGGTGTTTCC 286817 36 100.0 30 .................................... AGTCCTTTCCTGAAGCGGTCAAAGCCAGAC 286751 36 100.0 30 .................................... GGAGTCGCCCAACTCCAAGCGGAAAGTCAA 286685 36 100.0 29 .................................... CTGTACCAGCACGGCACCTGGCCGCGATA 286620 36 100.0 30 .................................... GGTGTCCGGAAGGAACGACATCCGCGTGGG 286554 36 100.0 30 .................................... GCCAGCCCAGTGCCCGGCACGGCGACTCCA 286488 36 100.0 30 .................................... CCCCAGCCCCAACTGCCCCTCCAGTGCGGC 286422 36 100.0 30 .................................... CCGTGCTGCCGTACCCGGATCGAACTTATT 286356 36 100.0 30 .................................... TGCCCTCAAGGTTGCCCGTCACCTTGCCCG 286290 36 100.0 30 .................................... CACGCTGCCCACCCCGAACGAGGGTAACTA 286224 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 37 36 100.0 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCTGATCTCGCACATCGCTAGAAGTCGCCCCCGATTCATCCCCGCCGCAGGGCATAGGAAAGGGGTTTTGCAGAACTTCCCTAACGTTGACCCTGATGATGGACTA # Right flank : CTGATCGCGATAACCCCTTGATTCGTCAAGGGTTTTTTCGCTTCTGCGGTCCAGGAAAACATGGCGTCTGGCTAGAAAAGATCAAACTGGTCGGGCGCTTTTTGCGCGGGCTGGCGGCTCCGGCCGTGGAAGGAAATGGCCCGTTCGTACTGCTTGTCGGTGAACTGGAAGATATGCACTTTGCCCCCGGCCGGCAAGGCCTGCTCCACCTGTCGGCAGAGCGTGTCCACCTGGGCCTGGCTGGTGCAAAAGCGCAGGTAGACGCTGAACTGGCTCATCTGGAAACCTACGTCCAGCAAGGCATTGCGAAACCCCGTGGCCGCCTTGCGTTCCGCCTTCGTGATCACGGGCAAATCGAACATCACTACCATCCACATCAGTCGGTACCCCGTCAGCATGGTTGCAATCCTGTCGCATGCGTCCGTTCAGCGTCACTTCAATCGGGATCGAAGCTGCCCGCCAGCGATAGCGGCAATCCGGGCAGGGGAAGATCGAGTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1829136-1828769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028290.1 Acidovorax cattleyae strain CAT98_1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1829135 32 100.0 36 ................................ GTGCACCTACAAAACGCGCATGTCCGGCAAGCTCAC 1829067 32 100.0 34 ................................ CCGCACCTCTCGCATTCGCCCTGTCTTTTTTTGA 1829001 32 100.0 35 ................................ GTGCTGTTCCTTGTGAAAGCCGCCGCGCGCCTCTT 1828934 32 100.0 35 ................................ CCACTCCCACACCAGGGGCACACCGCGCCCACGCA 1828867 32 100.0 35 ................................ TCGAGCATGAGCACGCGGGGCTTGCAGAGCGCCAC 1828800 32 96.9 0 ...A............................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.5 35 GTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Left flank : GCCAACGTGGTGTTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGCTGCTCAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTATGTATGCCAGGCGAGAAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGGGCCCTTTCGCTCCCTCCCTTTCCTTTTTCTTGTTGCCGGGCGTTGCGCACCCCGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGCAAGTGGTTGAGGGCAAAGGGAGTTTTTCCTGGGTGGGGGACGGGAAGCGCGAGCGGCGGGTCGATTGGGGCGGGTTCGCGGATGTATGCGGAAAATGGCTGGGGTGGCGCGGGTTTATAAAGGTGAC # Right flank : AGCACGAAGGCCGACGCATCGAACCGGCGCACCGGGTCGCGTGCGCTCCGGCGGGCGCGAGCATTGCGCCACGCCCCCTACCAGCCAGTTTCCAAAACAGGATTTCCTGTCGGGAAACTGGCCTCAGTACTGCAACGCCGGACGGTCCAGTGAATCCAGGCGCATGGCGTCTTCCAGGATCGCTTCCGTCAGCTGCGGCGTGCTGGCAGGTCCTTCGCTCATTCCGTAGGCCTGCTGCGCAGCATCGGCTGCAAGCGCATGCTGGGTTCGAGGAGAGTACTGTGCAAGCTCCTGCCGCGTACTCTCGGCCAAGGCAGGATCAATAACCGGCATCGTAGTGAAGATGGCGCCGGGTGTCGGATTGCGAAGACATTCGGCTTCCCATTGCTGCGCCGTGGCATACAGCGAGGTTCGCGGGTCCTCGATCTGCGCCCTGACGGCCTCCATCCGCGCCCGCGCGTGGGTGGCAGCGGGTTTGTCGAAGTGTTCGAGCACCGCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 4535965-4536861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028290.1 Acidovorax cattleyae strain CAT98_1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4535965 32 87.5 35 T......AA.A..................... ATGATCCAGGTTTTGGGTGCTGTCGCCCAGCTCGA G,T [4535967,4535972] 4536034 32 100.0 35 ................................ GTCGTGGTTGTAGTCGTCACAGGGGAACAGGTGCC 4536101 32 100.0 33 ................................ CTTTGCAGTCACCGCCGCCGGTGCCTCCGCCGG 4536166 32 100.0 36 ................................ TTCGCCGTGCCATAAGCCAACCCTGGAGGCCCGCCC 4536234 32 100.0 35 ................................ CTTGCAAGCGCAAGCGGCGTGAGTCGCTCTCCTGG 4536301 32 100.0 35 ................................ TCGCCATCGCCCTGGCCCTGGGCAGACGCTGCCTC 4536368 32 100.0 35 ................................ AAGCACTTCCCCGAAGCCGACCACGACGATGGCCC 4536435 32 100.0 35 ................................ TTGAGGCGGCCACGGCGTTGGAAACGCAGTACGGC 4536502 32 100.0 34 ................................ ATTTTGGCAGCGATGCTTATTCCGGGCGCCGCCG GCGCGTGG [4536526] 4536576 32 100.0 33 ................................ GTTGTTGTGGCCATCCTGGGGGCGGCATGGCTC 4536641 32 100.0 34 ................................ CCCGCGGTGGGCGAGATGTACGAAGGCAAGCCGA 4536707 32 100.0 34 ................................ AAACATAGGCGCTGATGGCGGCAACGGAATTGGC 4536773 32 96.9 25 ............A................... CGGGTGACGCTCGAAGTGCCTGAAC Deletion [4536830] 4536830 32 75.0 0 .....T..G.CA..A...A.....A......T | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 97.1 34 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAGGCCGCCATCGTGTCCCAGGTGGGTCACTTTTACTTCGGCGCAGTGGGTCAGTTTTAC # Right flank : TTTCTACCTGCAGCAGCAGAGCTTCGGCGGTAACGTGCCCCGCCCCCTCCTATCGCCCCAGTCCGACATCCACCCAGCCCTCCTCCGCTGACACTGCCCCCATGCCCCTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCTCTGGGTCTGGCAGCCGCGCTCCGCACCGGCTGGACCAGCGAAATCGGCAACGCCAACCCCCTCATCGCCGAGCGCTGGCAAACCCGCCCCGTCGTGGTGGTCGCCCCGCAGGAAAAAGCCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCAGGGCCGCCGCAATGGGCAACCGCTGGGGGCCGCGCGCACCGCGGCGCTGCTGAAGGCGCTGGATCTGGATGCGCGGGGTCCGGCCACGTTCATCCTCGTGGGCAAGGATGGCGGCGTGAAGATGAAAGAAGGCGCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //