Array 1 3426187-3426627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079113.1 Streptomyces albidoflavus strain LGO-A23 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3426187 29 100.0 32 ............................. CAGCATGAGGTGAGCGTATGGGCAGGTGCGGG 3426248 29 100.0 17 ............................. CTCGCGGGGTTCCTCCT Deletion [3426294] 3426294 29 100.0 32 ............................. GACCCCGTCACGTACGGCGAGCACCTCAGCAC 3426355 29 89.7 32 G...G.............G.......... TCCGGCGATCACGGTGACGGTCCCACAAGCTG 3426416 29 86.2 32 G...G...T.........G.......... TACGCCTACCAGACGATCTGGGACAACTGCGT 3426477 29 82.8 32 G...G..........C..G.........A CGAGGCACGGCAGTGGGAGAGGTTCTTCGACT 3426538 29 82.8 32 G...G.............G.C.......T ACGACCGTCAACATGGCGACCCTGGTCCGACG 3426599 29 69.0 0 G.C.G.....A.AAG...C.A........ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 88.8 30 ATGCCGCCCGGGCGCGCAAGGGGTGACCG # Left flank : GCGGCACGATGGACAAGCCGGGTCGCAAGGTCCGGCAGAAGGCCGGGCTTAACCGCGCGATCCTCGACGCCTCCATGGCCGAGGCCCGCCGGCAGATCACCTACAAGACTTCCTGGTACGGCTCCCGCCTCGCGGTCCTCGACCGCTGGTGGCCCTCCAGCAAGACCTGCTCGGCGTGCGGGTGGCAAAACCCAAGCCTCACGCTCGCCGACCGGGTATTCGAGTGCGCTCAGTGCGGACTCACCCTGGACCGCGACCTCAACGCGGCCCGCAACATCGAGCAGCACGCAACACAGGTCGCCTCCGGTACGGGGGAGACCCAAAACGCCCGTGGAGAACCCGTCAGACTCCCCCGCCCCCGGGCGGAGAAGCAGGGCTCGACGAAGCGGGAAGACACCGGCCCTCCCGGGCCGGTGCCACCTCGGCGGAGCAATCCGCCGACACCCCCCAACCCGCGCCAAGGACAGGCAAAGCTGTTCTAACGTCCCAGGTCAGGAAGT # Right flank : GCGGCGGCCTGGAAGTCCGGCCGGCCCGGCATCAACAGCAATTCAGAGCTGAACAATCACGTCGGATAGTCACCGAGCGAGCGACATAGAACACGTGGAGCACAAACCCCCCGCCCGCAGCAGTTCGGGGCAGGGGGTACGTGGGTTGAGCAGTCAGGCGAGCGGGGCGTTCTTTGCTTCGGTTACGAAGTTCGCCCACGCCGCCGCCGGGAAGACGAAGGCCCCCCTGCTGCGGTCCTTGGAGTCGCCGACCGCGACGCTGCCCTCCGGCATCGCCTGGATCTCGATGCACTGCCCGCCAGTGTCGCCGCTGTACGACGACTTCTTCCACGCTTCGGCCGGGAGATCATGCCGCATCATCAGGTGAGCCTCTTACTCGTTCTCAAGACCGTGCGCGAGGCGCTCGATCACGTGCATGGACTCTCGCGAAGATAGAGCGGCGGAGCGCAGGTGGTCAAAGGCTGAGCGGTACCGCTCGACAGCACTACTCTCCTCCAGGT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCCGCCCGGGCGCGCAAGGGGTGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGGCCCGGGCGCGCAGGGGGTGACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3721949-3720765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079113.1 Streptomyces albidoflavus strain LGO-A23 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3721948 28 100.0 33 ............................ GATGGTCGACCGGTTCGACGCCCGGGCCTCCGA 3721887 28 100.0 33 ............................ GGCGACCCTCACGGTGCCGGACGTGGTGGCGGA 3721826 28 100.0 33 ............................ GGACCGGTGGGAGGACGTCCTGGGCGTCGAGGA 3721765 28 100.0 33 ............................ GGAGCACTGCCGCGAGGGTCATGCGGAGCGGGA 3721704 27 96.4 33 .................-.......... GGCTATGACCTCCCCAAAGCTGAACTGGCCCGT 3721644 28 100.0 33 ............................ GAAGCGGGCCGCCTCGTGACGCAGCCGATGACG 3721583 28 100.0 33 ............................ GGAGACGCGGGGGGCGATGGAGTCCAGGTCGAT 3721522 28 100.0 33 ............................ GACGCCAGGGTGGGTCGGGGTGTCCATGAATCC 3721461 28 100.0 33 ............................ GTGAACTCCTCCCCGCTCGCGATGTGCTTCCCC 3721400 28 100.0 33 ............................ GACCCTGACCGTCGCCGCCGCCGTCAACGGCGC 3721339 28 100.0 33 ............................ GGCCGAGGCCAACGCCGCCTCGGCCGCGATGAT 3721278 28 100.0 33 ............................ GCCGCAGCTCTCCGACCTGCGCGAGAGCGGGGC 3721217 28 92.9 33 ......GT.................... GACACCGCGCGAATGCGTTTCCGCCCTCGCTGA 3721156 28 100.0 33 ............................ GCCGGACAGGTCAATTTTCAATTCCCGGGGGAG 3721095 28 100.0 33 ............................ GCGCTATGCCGGTGCACCCGGGCCGCCGCGCCC 3721034 28 96.4 33 ....................C....... GTCGGTTTCGACGGTGGTGCGGTGCACGGCGAG 3720973 28 100.0 33 ............................ GTCGTCGCCCGGGTCGAGCGGGAGGACGGCATC 3720912 28 100.0 33 ............................ GACGTGCACGGCCCAGGCGACGGACGCGCGGTC 3720851 27 96.4 33 .....................-...... GGTCAGCCTGGTAAAGCGGGCGGCGCCTGCCCG 3720791 27 78.6 0 ...........A...A.C...-..GC.. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CTACGACACCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACGGGCTACCTGCTCAAGGCCGAACGCCCCGAAGAACTCTTCACGGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGCTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGTTGACCCCGAGGGAGCGAGACATTCTGCGGCACCTGACGCAGGGGCTGGGGAACCGGGAGATCGCCCGGGCGTTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTGGGCCGGATTTACCAGAAGTTGGGCGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGTGGTTGGCGGGGGTGGGTTCGTGGATTGGGGGGTGGGTGGGGGGTGCGTAGGTTGGGGGGTTGAGAGAGGGGGCGGTGATGAGCAAAGGGATGGCAAAGTCAGTCTGAAGGTGCAGGTGAGAAAGG # Right flank : CAGGAACCGATGCAAGGCCGGTGCGGCAGGCAAGTGATGCCCGCAGGCGCAAGGACTGCCCATTGCCGAACGAGTGACGTTCCCAGGTTGGCCGCTGATGTCCAGCCGCCGCAAATCCGGCGGCCAAATGGCAGCGCGAGTACTAGCCACCGCCCCCGACGCCCCTCTCCACCTCCCCCAAAGCCTCCCCCCACCCAAACCCAGCCGCATCCCCCCGCTTAGGCAAATGCGGCTCCCCCTCGGTGAAGACCACCCGCACCCCCTGCCCCCGCAAGGTCTCCACCGCCCGCCCCACCGCAGGCTGCGCCCCCAGCGCCGTGGACCAGAACGGCGCCGCGACCACCGGCACACCGAGATGTACGGCCTCGGCCGGCACCCCCAACGCCACCGTGTCCGTGATCCCGGCCGCCCACTTGCACGCGGACGTGGTGGTGAGCGGCGCGACGAGCATCGCGTCCGCCTTGGGCAGCCCGCCGGACTGGCCGGGCAGGGTGTACCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4177261-4177041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079113.1 Streptomyces albidoflavus strain LGO-A23 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 4177260 27 100.0 34 ........................... CCCGTGCGGCGACCGCCACTGCACGACCTGCTGG 4177199 27 100.0 34 ........................... CCGGCTGTGGGCGCCGGGCGCGCGGATGCTCGCC 4177138 27 100.0 40 ........................... CCTTCTCCCGGTCGCTGGGCTTGGGCTTCTTCTTCTGCTG 4177071 27 96.3 0 .................A......... | T,GGC [4177042,4177058] ========== ====== ====== ====== =========================== ======================================== ================== 4 27 99.1 36 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : TGGACGACGGGCTCGCGATGAGCCTGCTCCGAGCGATGGACATGCCGCTCTCACCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACCGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGGGGGATTGAGGGGGCTGGTGGGGGCTTGGGTGGTACGGGGGTGGGGTTGGGACTTGGCGGGTGGGGTTGGCTCGGGTGAGGGTGAGGAGTGGGTCGGGGTGTGAGTGGCTGGAAGGGGGGCGCGGGAGATCTGTCGGGTTCAATGGGGGCGGGTGCTGGGTGGACACCACGGAGGGGATATGAGGCATTCGCCCGCATTGCCGGAATCTTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGAGTGAAACCCCAGGTCAGCGAGA # Right flank : CCTCCCGGACCCCGAGCATGCGACCGGCAGCCGCCGCTCCCCGCCCACGCCTAGGTCGACGCGGTGCTCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCTGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGGAGCGAGGCGTGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCCAGCTCGGTCGCGGCCCGTGCCCCCGCGTCCAGGTGGGCCGTGGGCTCGTCCAGAAGCAGCAATGGCGTAGGTGTCAGCCAAGCCCGTGCCAAAGCGATGCGGCGGCGTTCGGACGGGGTGAGGTGATCCGGGCGGAGGGGGCGGGCGGGGTCAGCGGCGAGGGGGGTCAGGGTGAAGGTGTGGATGGCTTCCGTGATGCGAGGGGCCGGGGCGTTCGGGGCGAGGTAGGTGAGGTTGTC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7058635-7058302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079113.1 Streptomyces albidoflavus strain LGO-A23 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7058634 28 100.0 33 ............................ GCGATCGTCGTGCGGCGCGGACTGCTCGGCTCC 7058573 28 100.0 33 ............................ GTAGTTGTTGGCGTTCATGGTGCTCCTTAGGCG 7058512 28 100.0 33 ............................ TCGAGTCCGGGGAGTACCCGCGCGGCTCGATAC 7058451 28 100.0 33 ............................ GAACCGCCCTCAGCTCGCCCCCGCCCAGATCGC 7058390 28 100.0 33 ............................ CCTGCCCCTCGTCGCTCCGGACCGGCACCCCCG 7058329 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GCTGCGCGGCATGGGAGTGAGCGTGCTGTACGGGGAGGGCGGGTTCCAGCCGAATCCACCCGGCGAAGGCAGCGACTTCCCATGGCGCCTCGCCCTCGACGAGGTCGAGCGCGCTGTCGGCGCGGGGCGCTAGCCTGCCCCCATGTCCTCCCTGCCTGCTGCCCGGCCGCGTCCTGCGTCGGTGGTGAACGCGGAGATCCGCGCGCTGATGCTGCGCTCGGGCGGCCGCCTGGCTGCCGGAGACAGGGCCCGGTACGTAGCGCTGATCGCGGAGTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCGCCGCCGACGCGGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACAAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCA # Right flank : GGAGCAGCTGGCCCAGGGAATCCTCCGCGAGCAGGATCAGCACCTTCCGGTCCCCGACCGTGCCAGTAAGGTCCAGCAGCTCACCGACACCGTCCTCCTGCACGCGCACCGCCTCCAGCACGACCCCATGGTCCGGGCCGGGGTACGGCTCTCACTGGACCGGGAAGCGCAAGAGGTCAACCGTCAGGGAGCCTTCACGCACTGGGGAACCGTCATCCGGGAACTCCTCGAACAGGCCGAGGCGCAAGGGGAACTCCTCCCCCACATCCACGTCGCCCAGACAGCCGACGTCCTGGTCGGCTCCTTCGCCGGCGTACAGGCCATGTCGCAGGTCCTGAGCGACTACCAGGACATCCTCACTCGGGTGACCGCCCTGCTGCACCACATCCTCCCCAGTACCGTCCTTCCGCCCATCCTCGCCACGACCGAGATCACCCCCGCCCGTGCCCCAGGCCGTCGCCCACGAACTGCGTCAGGACAGCACACACCACCACCCCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 7061995-7061331 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079113.1 Streptomyces albidoflavus strain LGO-A23 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 7061994 28 100.0 34 ............................ CTCCGCGTCCACGGGGCGTACAGCGTCGAGGCCG 7061932 28 100.0 33 ............................ GCCCTGTTTCATGCGCCGCACGTCGGCCAGCGC 7061871 28 100.0 33 ............................ GATCTCGCGGCATCCCGCGACCTGGCCTTGGTG 7061810 28 96.4 33 .....G...................... GCGGCTCCGGCGCGGCCCCGCCGTCCCCCCGCA 7061749 28 100.0 34 ............................ GAGAGCGCCCTTGAGTCCCTCCATCACTTCTCAC 7061687 28 100.0 33 ............................ TGCATGAGCTGTGACCGATCCGGCCGTGTCGGC 7061626 28 100.0 33 ............................ CCGGCTGGTCGACGCCTACATCCGCGACGGCAT 7061565 28 100.0 33 ............................ CTGGACCCACTCAGCAACCACCACTGCTAGGTC 7061504 28 100.0 33 ............................ GCCGGGGCCGTGGGGCTGGTCGCTGACGATGGT 7061443 28 96.4 57 .............T.............. CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 7061358 28 85.7 0 ....................C.A..G.G | ========== ====== ====== ====== ============================ ========================================================= ================== 11 28 98.0 36 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGAGCCGGACCACCGGACACCTCATCCAGCAGGCCCCGCGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAAACCCCTAACGGACCTTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCAGCGGCGGTCTCCGGGCTGCACAGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGCGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCACCCCGAGGTCCACGGCCGTGGCGGTATCGAGGCGCCCGGCGCACCACACGCACTCGGTGCCCCGGAGCTGCAGCTCACCGAGAGCGGTCGGCTGCGGTAACTCCTGCACTGTCGTCGCCATGGTCATCCCCTGCTGTCCGATCGAGATCAGCAGGATGGCGCGCGGCCGAGGCCGGAACGCTTACAGATCTGTGAGCGTTACACCCCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 7072319-7072591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079113.1 Streptomyces albidoflavus strain LGO-A23 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7072319 29 100.0 32 ............................. CGCTGGGCGAGCAGCTCGTAGACGGCGCGGAC 7072380 29 100.0 32 ............................. AACGAGTGCGCCGCCCAGGGGCGGCAGAAGGA 7072441 29 96.6 32 ............................T CGTGAGGGCCGTCCACGCCTTGGACCACATGA 7072502 29 96.6 32 ...........A................. CTGATCGCGCACCTCGCGGAGCGCGGACTCGT 7072563 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCGCCAGCTGCGCTCGGAGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGACGAATCCGCGACCGTCTATGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAACGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : ACTGGCAGGAAATCTTCCCCGAAGGCCGCGGACTCAGCCAGGTAAAAGCCAAAAACACCTACACGCTGGGAGGAAATGAGTGAGCGGCGCAAGCGACCTGTGGGGAGAATTCGGCAAACACCACGCACAAGGCCAGAAAGGCGCACAAGCACTCGGCCAGGAGATCGAACGCATCGCCCGCCAGGGCGGCATCACCTCACCCGTGACCACCACCCGCGGCCTGCGCGCACGCCTGCGCTATCTCGACAGCCCAGCTGGCCGCCGGGCCCTCGCCGAGCACGGCGTCTCCAGCCGTCTGCTCCGCGCCTGGGCGGCCGGCCGCACTCCCAGCCGGGCGAAGCTGGCGGCTGTCGATGCCGCGTACTGGGGTCGCCGCCGAGAGAATCTGGTCCGGTCGGGTGCGCTTAAGCGGCTCCTTGACAACGAGGGCAGGGGCCGCCGCATCGAGATCTATCCTGTGGACCAATCAGCGGTGCCGGAGAAGCGGAAGCGGGTCATCT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //