Array 1 963847-965521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022138.1 Salmonella enterica subsp. enterica serovar Waycross strain SA20041608 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 963847 29 100.0 32 ............................. CATTCAGGAATACGGCTGGACTAATCCGGTCC 963908 29 100.0 32 ............................. GAATCTATATTGTAGGGAATCTTAAGTCAAGG 963969 29 100.0 32 ............................. GTACTCCTGGCTAATTCTTTTGATTGCCGCCA 964030 29 100.0 32 ............................. CGTGAAATCGTGACGCAAAAGGGAGGGGCTTC 964091 29 100.0 32 ............................. CAAGAGATCAGATTGATGCTGACTGTCAGCCT 964152 29 100.0 32 ............................. GCCCCGATAGCGTCAACTATCAGGGCCTGCAA 964213 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 964274 29 100.0 32 ............................. TAATCGTGATGAGTTGCCATGCACGCAGCTGC 964335 29 100.0 32 ............................. CCTCATCGATGTGATATCCCTCTGGTGATAGG 964396 29 100.0 32 ............................. AGATCTGCAACGTTATTGAACAGGGGGCGAAG 964457 29 100.0 32 ............................. GAATAACCCTCTGTGGGGGTGTTATCGGTGGC 964518 29 100.0 32 ............................. TGTACGTCGCGCCGCTGTCGTCAGGATAAATG 964579 29 100.0 32 ............................. CTCAGGCGTTTCATCGTGCGGCATCCCGGAGA 964640 29 100.0 32 ............................. GCCGGGTGCCATGATATACCGGAATCTGGTTC 964701 29 100.0 32 ............................. AACGTCGTATACATCGTTCTATTTTGGTCATT 964762 29 100.0 32 ............................. CGCGCGATCAGGTCGCTGAACCGGTCAAAATT 964823 29 100.0 32 ............................. GCATTAATGATAGCGTTTGCCATTTGCCCCCC 964884 29 100.0 32 ............................. GCTTGCTTCATTGACATGCCTGCCGCTGCTCC 964945 29 100.0 32 ............................. AACGACAAAACCCACTGGATTATTTTTGTGAA 965006 29 100.0 32 ............................. TTCCGCCATGACCGTTTCAGCCTCCAGCTTTC 965067 29 100.0 32 ............................. GAATTTATGGATAACGGCGGTATGTACGCGCC 965128 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 965189 29 100.0 32 ............................. CGCTGACGAGGTCGCGCGCGTGGCTGCTGCGC 965250 29 100.0 32 ............................. TTAGCTGGCGTTACATGGCTTATGATTTGTTG 965311 29 100.0 32 ............................. CAAGCGGATGTCGTGAAAAAACTCAACGACGC 965372 29 100.0 32 ............................. GCGGGTAGGATAGCTAAGCTGTGAACCGATCT 965433 29 96.6 32 .............T............... CTGACGGGGTGCATTTTTCAATACCGATAACG 965494 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGACTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGGTGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTAGAATGTGGTGATGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTTCCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACTGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 982079-984916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022138.1 Salmonella enterica subsp. enterica serovar Waycross strain SA20041608 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 982079 29 100.0 32 ............................. CGTGGTTATATCGATCTGATAGTCGGGCGTTG 982140 29 100.0 32 ............................. CGCCACCACCTGCGCCTCCGGCCCCGCCTTAC 982201 29 100.0 32 ............................. GCGCTCAACTGGCGCGCAACCTGCCGTTTGCC 982262 29 100.0 32 ............................. CGCGTGAAAAACTGCGTTACCGCCTGGGTGAG 982323 29 100.0 32 ............................. CCCAGGATTTTACGTTGAGGCTAACATACTAC 982384 29 100.0 32 ............................. GTGAACGCGAGAAAATAAAAAGGCCAACATAG 982445 29 100.0 32 ............................. TATCACACTCTGTTACACCGTTATGCACAGAC 982506 29 100.0 32 ............................. CTCACCGGGTGGCAGAACTGGAGAAATACCGC 982567 29 100.0 32 ............................. AGTTTTATGTTGATGCTAATCCCGGCGAATTC 982628 29 100.0 32 ............................. ACCAGAAAATTTAACTATATCACCTTCGGACA 982689 29 96.6 32 ............................T GATTCATGTGACCTCTATTGTTTGGTAAATAA 982750 29 100.0 32 ............................. CGAGAGAGCTGAATATCAAGCTGTATCTCCGA 982811 29 100.0 32 ............................. AACTGGTTTACGCCTACGCTATGTGGATTAGC 982872 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 982933 29 100.0 32 ............................. GCAGTTACGGCGCTGGTGCTGGGGCAGAACAT 982994 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 983055 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 983116 29 100.0 32 ............................. CGGCTATCGCTGGCCTACTGGTGTACCGGATT 983177 29 100.0 32 ............................. ATAGCCCTTAGCTCCGCCACTAACATACCGAT 983238 29 100.0 32 ............................. GAAAGAGAACTTTGCGAATCAGGTCAATGCCC 983299 29 100.0 32 ............................. CATCAGTGTCCACTACTAACATAGTGATCGTA 983360 29 100.0 32 ............................. GGGGTATCCGTTATCGCCGATCGCTACCAGAA 983421 29 100.0 32 ............................. CGAAAATCATCGCCGCTAAGACGCTATTTCGC 983482 29 100.0 32 ............................. AGCAAAAGGTTTACAATGATGAATATAACAAA 983543 29 100.0 33 ............................. CCGGATCCCCTATTCCGCGATGAGTACGCAAAA 983605 29 100.0 32 ............................. ATGTTCCGAACTCTATTACCGATACTGGCGCT 983666 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAGATC 983727 29 100.0 32 ............................. AATTCGCCCGGATGTTCACTTACGGGCTGGGC 983788 29 96.6 32 ...........T................. CGGCTATTTGAAGAGACTCCGGGTGGAGACCT 983849 29 100.0 32 ............................. TCAGCGTGATATCGCCCGTCAGCGCCTTGTTG 983910 29 100.0 32 ............................. ATTGACTTGAATAGTATCAAACATGGATTAAC 983971 29 100.0 32 ............................. GTGTGCCAATCCATCCATGTGCTTTGTTACTT 984032 29 100.0 32 ............................. CGCCGCCACTGGTCGGCCGCGTGAATCAGTTT 984093 29 100.0 33 ............................. GACCCATTAAAATGGCGTATATGTCGCCTTTTC 984155 29 100.0 32 ............................. GCGATCACAAACGACGACGCCGATTTTATTGA 984216 29 100.0 32 ............................. TCAACCCCGAGACGTTTTAAAAAAATTAGCTA 984277 29 100.0 32 ............................. GGGTGGGGAGGTGCTCAAAAGTCGCAGAAAGT 984338 29 100.0 32 ............................. ATTAATACCTACTGACTGTAAATATTGCGACA 984399 29 100.0 32 ............................. CGGCGCAGATGAATCTGCCAACAGGCGCTCTG 984460 29 100.0 32 ............................. GGCGCAAAGGCCATCGACGGACAAGAAAACCC 984521 29 100.0 32 ............................. TACCCCGCCGCGTAATACGACTGGGCTGGAAG 984582 29 100.0 32 ............................. GATTATTCGATCCACACGTTAACACTGGCTGA 984643 29 100.0 32 ............................. GGCGGGCCTCACCAAGGCTCATGGGGGCTTGA 984704 29 100.0 32 ............................. TACGCCACCGGAAACTATTTGCAATTTCGCCG 984765 29 100.0 32 ............................. AAGATAACTCCTGTCTTTCCATCATTCGAAGC 984826 29 96.6 32 ............T................ AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 984887 29 96.6 0 A............................ | A [984913] ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGTCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //