Array 1 42099-39508 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAS01000012.1 Escherichia coli strain 40-1BK entry12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42098 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42037 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41976 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41915 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41854 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41793 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41732 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41671 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41610 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41549 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41488 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41427 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41366 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41305 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41244 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41183 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41122 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41061 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41000 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40939 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40878 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40817 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40756 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40695 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40634 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40573 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40512 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40451 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40390 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40329 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40268 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40207 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40146 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40085 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40024 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39963 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39902 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39841 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39780 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39719 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39658 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39597 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39536 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1785-229 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAS01000050.1 Escherichia coli strain 40-1BK entry50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1784 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 1723 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 1662 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 1601 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 1540 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 1479 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 1418 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 1356 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 1295 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1234 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 1173 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 1112 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 1051 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 990 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 929 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 868 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 807 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 746 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 685 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 623 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 562 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 501 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 440 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 379 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 318 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 257 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //